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NCBI: 26-AUG-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA2272 [new locus tag: SA_RS13045 ]
  • pan locus tag?: SAUPAN006071000
  • symbol: SA2272
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA2272 [new locus tag: SA_RS13045 ]
  • symbol: SA2272
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2547293..2548618
  • length: 1326
  • essential: no DEG other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGAACAAAACTAAATATCAAATAAATTCTGACAATATAAAGAGTAACTCTGAAGAAACA
    AGCGCAATATCTAGTATAAGTTATGAAATAGAAAACGCAAATAATAACGATTTAAATAAT
    GCAAGTATTCAAACGCAAATAGAAATATTAAAATCACAAAATAGTTTCCCTAAAAATCTT
    TCATATCTTAAAAGTTATACGGACCCCAAAACAGGTACGACTACAAGCGCCTTTTTAAAT
    AAAGACACTGGCAAAGTTACTTTAGGTATGACAGGTACTAATGTACACAAAGACGCAATA
    TTAAAACAAACATTTGGTGTTCCTTCTTATCAAGGATATATAGATGCGAGTGAAACGCTA
    AAGGATATTGGGGCCGATGTCAATATTGGCCTTCATTCCGTCACAGATAAAGATCCACAT
    TATAAAAATACCCAAGACTTTATCAAAAATATCAAAAAAGACTATGATATTGATATTATT
    ACCGGACATTCGCTGGGCGGTAGAGATGCGATGATTTTAGGTATGAGTAATGATATTAAA
    CATATCGTTGTGTATAATCCAGCTCCATTAGCGATCAAAGATGTGAGCGGCCTTTATGCC
    GATCAAGAAGAACTTAAAAAATTGATTGAAAAGTACGATGGTCACATTGTAAGATTTGTG
    TCTGATGAAGACGAATTAGATGCAGGTGTCCGCAATCATTTATATGAAACTGCTGGAGAA
    AAAATAGTACTTAAAAATGGAGAAGGCCATGCAATGAGTGGTATTTTAATGAGCAGAACA
    CAGGCTATAATCTTAGCTGAATTAAACAAAGTTAAAGGCTACCAAGACGAAAATAATAAA
    GCATTAAAATCCGTTCGTAAACAAACGAGGCATAGATTACATAAAGTAGAGACGTTAAGA
    GCGAATTGGATTCAAACAACGGGTGGATCACTCTCTTCCTCCCAACAACAATTATTAGAA
    GCTTTAACAGCACTAACCATTGCCGAAGGCTTAAATCAATTAGTGAATGAAGAAAGCCAA
    CATTTGAAAAAAATGTATCACGCGATGGCACATAAATTTGGAGACAACTGGAAAAAAGCG
    CAAGAAGTTGGAAATGAAATTGGTGAAAAATTAACCTCTGAAGAGGTTATAGATGAATTA
    AGAAAAGGTGGCGCGTATGAAAGTAAACTTGAAACAGATCCCAAAAGAAAAATTGATGAT
    AAGATAAAGAAATTAAATGATGTTTATAAAAATTGTAATGGCTATATCGCAAAAATTAAA
    CAGAGTATCGAAGCAATTGTTTCTAATGACCAAATGTTAGCGAGCCAGATTGATGGGATG
    ATGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1326

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA2272 [new locus tag: SA_RS13045 ]
  • symbol: SA2272
  • description: hypothetical protein
  • length: 441
  • theoretical pI: 6.71552
  • theoretical MW: 49186.1
  • GRAVY: -0.622903

Function[edit | edit source]

  • TIGRFAM:
    phasin (TIGR01985; HMM-score: 12.7)
  • TheSEED  :
    • FIG01107856: hypothetical protein
  • PFAM:
    no clan defined DUF2959; Protein of unknown function (DUF2959) (PF11172; HMM-score: 15.3)
    AB_hydrolase (CL0028) Lipase_3; Lipase (class 3) (PF01764; HMM-score: 15.2)
    no clan defined Phasin_2; Phasin protein (PF09361; HMM-score: 14.5)
    AB_hydrolase (CL0028) UPF0227; Uncharacterised protein family (UPF0227) (PF05728; HMM-score: 14.2)
    no clan defined DUF4413; Domain of unknown function (DUF4413) (PF14372; HMM-score: 12.7)
    BRCT-like (CL0459) BRCT_2; BRCT domain, a BRCA1 C-terminus domain (PF16589; HMM-score: 12.3)
    and 2 more
    no clan defined DUF4446; Protein of unknown function (DUF4446) (PF14584; HMM-score: 11.6)
    Gp-FAR-1; Nematode fatty acid retinoid binding protein (Gp-FAR-1) (PF05823; HMM-score: 10.7)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.025314
    • TAT(Tat/SPI): 0.002743
    • LIPO(Sec/SPII): 0.005311
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MNKTKYQINSDNIKSNSEETSAISSISYEIENANNNDLNNASIQTQIEILKSQNSFPKNLSYLKSYTDPKTGTTTSAFLNKDTGKVTLGMTGTNVHKDAILKQTFGVPSYQGYIDASETLKDIGADVNIGLHSVTDKDPHYKNTQDFIKNIKKDYDIDIITGHSLGGRDAMILGMSNDIKHIVVYNPAPLAIKDVSGLYADQEELKKLIEKYDGHIVRFVSDEDELDAGVRNHLYETAGEKIVLKNGEGHAMSGILMSRTQAIILAELNKVKGYQDENNKALKSVRKQTRHRLHKVETLRANWIQTTGGSLSSSQQQLLEALTALTIAEGLNQLVNEESQHLKKMYHAMAHKFGDNWKKAQEVGNEIGEKLTSEEVIDELRKGGAYESKLETDPKRKIDDKIKKLNDVYKNCNGYIAKIKQSIEAIVSNDQMLASQIDGMM

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]