From AureoWiki
Jump to navigation Jump to search

NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_2383 [new locus tag: NWMN_RS13725 ]
  • pan locus tag?: SAUPAN006071000
  • symbol: NWMN_2383
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_2383 [new locus tag: NWMN_RS13725 ]
  • symbol: NWMN_2383
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2616674..2617786
  • length: 1113
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGAGTCAAACGGAATATCAAATAAAATCTGGCAATATAAAAGGTAACTCTGAAGAAACA
    AGTACAGTATCTAATATAAGTTATGAAATAGAAAACGCAAATAACAGTGGTTTAAAACAA
    AATAAAATTGATAAACAAATTAAAAAGTTACAAGAAAAAAATAAATTCCCTAAAAATCTT
    TCATATCTTAAAAGTTATACGGACCCCAAAACAGGCACGACTACAAGCGCCTTTTTAAAT
    AAAGACACTGGCAAAGTTACTTTAGGTATGACAGGTACTAATGTACACAAAGACGCAATA
    TTAAAACAAACATTTGGTGTTCCTTCTTATCAAGGATATATAGATGTGAGTGAAACGCTA
    AAGGATATTGGGGCCGATGTCAATATTGGCCTTCATTCCGTCACAGATAAAGATCCACAT
    TATAAAAATACCCAAGACTTTATCAAAAATATCAAAAAAGACTATGATATTGATATTATT
    ACCGGACATTCGCTGGGCGGTAGAGATGCGATGATTTTAGGTATGAGTAATGATATTAAA
    CATATCGTTGTGTATAATCCAGCTCCATTAGCGATCAAAGATGTGAGCGGCCTTTATGCC
    GATCAAGAAGAACTTAAAAAATTGATTGAAAAGTACGATGGTCACATTGTAAGATTTGTG
    TCTGATGAAGACGAATTAGATGCAGGTGTCCGCAATCATTTATATGAAACTGCTGGAGAA
    AAAATAGTACTTAAAAATGGAGAAGGCCATGCAATGAGTGGTATTTTAATGAGCAGAACA
    CAGGCTATAATCTTAGCTGAATTAAACAAAGTTAAAGGCTACCAAGACGAAAATAATAAA
    GCATTAAAATCCGTTCGTAAACAAACGAGGCATAGATTACATAAAGTAGAGACGTTAAGA
    GCGAATTGGATTCAAACAACGGGTGGATCACTCTCTTCCTCCCAACAACAATTATTAGAA
    GCTTTAACAGCACTAACCATTGCCGAAGGCTTAAATCAATTAGTGAATGAAGAAAGCCAA
    CATTTGAAAAAATGTATCACGCGATGGCACATAAATTTGGAGACAACTGGAAAAAAGCGC
    AAGAAGTTGGAAATGAAATTGGTGAAAAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1113

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_2383 [new locus tag: NWMN_RS13725 ]
  • symbol: NWMN_2383
  • description: hypothetical protein
  • length: 370
  • theoretical pI: 9.55327
  • theoretical MW: 41427.8
  • GRAVY: -0.646757

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325
  • PFAM:
    AB_hydrolase (CL0028) Lipase_3; Lipase (class 3) (PF01764; HMM-score: 16.4)
    UPF0227; Uncharacterised protein family (UPF0227) (PF05728; HMM-score: 14.6)
    BRCT-like (CL0459) BRCT_2; BRCT domain, a BRCA1 C-terminus domain (PF16589; HMM-score: 13.2)
    and 1 more
    no clan defined DUF4446; Protein of unknown function (DUF4446) (PF14584; HMM-score: 12.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 0
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.016933
    • TAT(Tat/SPI): 0.002036
    • LIPO(Sec/SPII): 0.004348
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSQTEYQIKSGNIKGNSEETSTVSNISYEIENANNSGLKQNKIDKQIKKLQEKNKFPKNLSYLKSYTDPKTGTTTSAFLNKDTGKVTLGMTGTNVHKDAILKQTFGVPSYQGYIDVSETLKDIGADVNIGLHSVTDKDPHYKNTQDFIKNIKKDYDIDIITGHSLGGRDAMILGMSNDIKHIVVYNPAPLAIKDVSGLYADQEELKKLIEKYDGHIVRFVSDEDELDAGVRNHLYETAGEKIVLKNGEGHAMSGILMSRTQAIILAELNKVKGYQDENNKALKSVRKQTRHRLHKVETLRANWIQTTGGSLSSSQQQLLEALTALTIAEGLNQLVNEESQHLKKCITRWHINLETTGKKRKKLEMKLVKN

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=NWMN_2383&oldid=69509"