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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_002552
  • pan locus tag?: SAUPAN006240000
  • symbol: JSNZ_002552
  • pan gene symbol?: —
  • synonym:
  • product: TetR/AcrR family transcriptional regulator

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_002552
  • symbol: JSNZ_002552
  • product: TetR/AcrR family transcriptional regulator
  • replicon: chromosome
  • strand: +
  • coordinates: 2562757..2563326
  • length: 570
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGATGGAAAGTAAATCTATAGATCCAAGAATCGTTAGAACCAAACAATTGCTTGTCGAT
    GCTTTTCTTAAAATTTCTAGAGAAAAGAAATTATCTCAAATTACAGTTAAAGATATCACT
    GATATTGCTACGCTAAATCGTGCAACATTTTATGCTCATTTCACTGATAAAGAAGACCTC
    CTAGACTACACATTGTCTGTAACCATTTTAAAAGACTTGAATGATAACTTGAGCATTTCT
    AATGTCATTAATGAAAAGGTGCTGCGTAATATTTTCATTTCAATTGCGAGTTATATCAAA
    GATGCTGCAAAGTCTTGCGAATTAAATAGTGAAGCATTTTGCAACAAAGCACATCAACGT
    ATTAATAATGAATTAGAAGATATTTTTGCGATTATGTTAGAAAACAGCTACCCAGAGCAT
    CAACGAGATATCATTGTAAATAGTGCGAGTTTTTTAGCAGCTGGTATCTCAGGCTTAGCA
    TTACATTGGTTTAACACGAGTCAAGAGACAGCCGATGTGTTTATCGATCGCAACCTTCCA
    TTTTTTATTCATCATATAGCACATTTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    570

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_002552
  • symbol: JSNZ_002552
  • description: TetR/AcrR family transcriptional regulator
  • length: 189
  • theoretical pI: 6.15092
  • theoretical MW: 21619.6
  • GRAVY: -0.0677249

⊟Function[edit | edit source]

  • TIGRFAM:
    probable dihydroxyacetone kinase regulator (TIGR02366; HMM-score: 40.6)
    and 2 more
    Signal transduction Regulatory functions DNA interactions transcriptional repressor BetI (TIGR03384; HMM-score: 20.5)
    Signal transduction Regulatory functions DNA interactions mycofactocin system transcriptional regulator (TIGR03968; HMM-score: 16.5)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    HTH (CL0123) TetR_N; Bacterial regulatory proteins, tetR family (PF00440; HMM-score: 26.6)
    and 1 more
    TetR_C (CL0174) TetR_C_8; Transcriptional regulator C-terminal region (PF14278; HMM-score: 17.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helix: 1
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8812
    • Cytoplasmic Membrane Score: 0.0446
    • Cell wall & surface Score: 0.0012
    • Extracellular Score: 0.073
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002276
    • TAT(Tat/SPI): 0.000145
    • LIPO(Sec/SPII): 0.000324
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MMESKSIDPRIVRTKQLLVDAFLKISREKKLSQITVKDITDIATLNRATFYAHFTDKEDLLDYTLSVTILKDLNDNLSISNVINEKVLRNIFISIASYIKDAAKSCELNSEAFCNKAHQRINNELEDIFAIMLENSYPEHQRDIIVNSASFLAAGISGLALHWFNTSQETADVFIDRNLPFFIHHIAHF

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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