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⊟Summary[edit | edit source]
- pan ID?: SAUPAN006240000
- symbol?: —
- synonym:
- description?: TetR family transcriptional regulator
- TetR family transcriptional regulator
- TetR family regulatory protein
- TetR/AcrR family transcriptional regulator
- Transcriptional regulator, TetR family
- bacterial regulatory s, tetR family protein
- regulatory proteins, tetR family protein
- regulatory protein TetR family
- transcriptional regulator, AcrR
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 6303292..6303894
- synteny block?: BlockID0049640
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2509
08BA02176:
C248_2630
11819-97:
MS7_2578
6850:
RSAU_002412
71193:
ST398NM01_2622
ECT-R 2:
ECTR2_2426
ED133:
SAOV_2616
ED98:
SAAV_2638
HO 5096 0412:
SAEMRSA15_24740
JH1:
SaurJH1_2648
JH9:
SaurJH9_2594
JKD6008:
SAA6008_02610 (acrA)
JKD6159:
SAA6159_02467 (acrA)
LGA251:
SARLGA251_23460
M013:
M013TW_2546
MRSA252:
SAR2652
MSHR1132:
SAMSHR1132_23870
MSSA476:
SAS2458
Mu3:
SAHV_2555
Mu50:
SAV2571
MW2:
MW2492
RF122:
SAB2445
ST398:
SAPIG2622
T0131:
SAT0131_02783 (icaB)
TCH60:
HMPREF0772_10619
TW20:
SATW20_26920
USA300_TCH1516:
USA300HOU_2566
VC40:
SAVC_11735
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MLKQQMLGSEQMMESKSIDPRIVRTKQLLVDAFLKISREKKLSQITVKDITDIATLNRAT
N315 -----------MMESKSIDPRIVRTKQLLVDAFLKISREKKLSQITVKDITDIATLNRAT
NCTC8325 -----------MMESKSIDPRIVRTKQLLVDAFLKISREKKLSQITVKDITDIATLNRAT
Newman -----MLGSEQMMESKSIDPRIVRTKQLLVDAFLKISREKKLSQITVKDITDIATLNRAT
USA300_FPR3757 -----------MMESKSIDPRIVRTKQLLVDAFLKISREKKLSQITVKDITDIATLNRAT
*************************************************
COL FYAHFTDKEDLLDYTLSVTILKDLNDNLSISNVINEKVLRNIFISIASYIKDAAKSCELN
N315 FYAHFTDKEDLLDYTLSVTILKDLNDNLSISNVINEKVLRNIFISIASYIKDAAKSCELN
NCTC8325 FYAHFADKEDLLDYTLSVTILKDLNDNLSISNVINEKVLRNIFISIASYIKDAAKSCELN
Newman FYAHFTDKEDLLDYTLSVTILKDLNDNLSISNVINEKVLRNIFISIASYIKDAAKSCELN
USA300_FPR3757 FYAHFTDKEDLLDYTLSVTILKDLNDNLSISNVINEKVLRNIFISIASYIKDAAKSCELN
*****:******************************************************
COL SEAFCNKAHQRINNELEDIFAIMLENSYPEHQRDIIVNSASFLAAGISGLALHWFNTSQE
N315 SEAFCNKAHQRINNELEDIFAIMLENSYPEHQRDIIVNSASFLAAGISGLALHWFNTSQE
NCTC8325 SEAFCNKAHQRINNELEDIFAIMLENSYPEHQRDIIVNSASFLAAGISGLALHWFNTSQE
Newman SEAFCNKAHQRINNELEDIFAIMLENSYPEHQRDIIVNSASFLAAGISGLALHWFNTSQE
USA300_FPR3757 SEAFCNKAHQRINNELEDIFAIMLENSYPEHQRDIIVNSASFLAAGISGLALHWFNTSQE
************************************************************
COL TADVFIDRNLPFLIHHIAHF
N315 TADVFIDRNLPFLIHHIAHF
NCTC8325 TADVFIDRNLPFLIHHIAHF
Newman TADVFIDRNLPFLIHHIAHF
USA300_FPR3757 TADVFIDRNLPFLIHHIAHF
********************