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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_002577
  • pan locus tag?: SAUPAN006279000
  • symbol: sasK
  • pan gene symbol?: sasK
  • synonym:
  • product: LPXTG-anchored surface protein SasK

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_002577
  • symbol: sasK
  • product: LPXTG-anchored surface protein SasK
  • replicon: chromosome
  • strand: -
  • coordinates: 2582271..2582906
  • length: 636
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGAAAAAAGTTATAAGTTTATTTGTTGCAATTTTATCAGTGTTGATTTTTACGGATAAT
    GCGAACGCCGAAAATAACAAGCCTGAAGGTGTGAATGAAAACAGCAATTTAATACCAGTT
    AGACAACCGGATGCAAATTATCCTGGGCCAGTTAGTGACATAGCACGTGTGAAAAAACTT
    GATAATTTAATAGATGGCACGAAAGCTCCAGATGTTATCAAGCAGTTGAAAGATGATAAT
    GAGGTGCAGAATAATGCGGTAAAGGCAAAAAAATCTGGAATAGTATCGGATTGTAGACAT
    TTACTAAAACATCCAGATAATTTAATGGATGGCACGAAAGATCCTAAAGTTATCAAGCAG
    TTGAAAAACGCAAATGTAACATCGAATAATGGTGCTGTAAATCCAAGGGTTAAAGCAAAT
    GATACTCACACAAAAAGTAATAAACAAATGGCTAAACAACAAAGTATTCATTTGGATAGC
    AAGAGCAAGTCAGGACATAAGCAACAATTGAAAGAATTGCCAAAAACAGGAGTAAACAAC
    GAAAGTAATACAGCAATTATGGCTTTATTTAGTGGTTTAATATTGCTTGTAGTAAGTTTA
    GAGACAAGATTTATAAAATTAAATAGCCATCAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    636

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_002577
  • symbol: SasK
  • description: LPXTG-anchored surface protein SasK
  • length: 211
  • theoretical pI: 10.3937
  • theoretical MW: 23170.4
  • GRAVY: -0.563981

⊟Function[edit | edit source]

  • TIGRFAM:
    Cell structure Cell envelope Other LPXTG cell wall anchor domain (TIGR01167; HMM-score: 15.1)
  • TheSEED: data available for N315
  • PFAM:
    no clan defined Gram_pos_anchor; LPXTG cell wall anchor motif (PF00746; HMM-score: 22.7)
    and 2 more
    eIF3_N; eIF3 subunit 6 N terminal domain (PF09440; HMM-score: 14)
    Peptidase_CA (CL0125) Menin; Menin (PF05053; HMM-score: 8.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cellwall
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 10
    • Extracellular Score: 0
    • Internal Helices: 2
  • DeepLocPro: Cell wall & surface
    • Cytoplasmic Score: 0.0008
    • Cytoplasmic Membrane Score: 0.1198
    • Cell wall & surface Score: 0.5315
    • Extracellular Score: 0.3479
  • LocateP:
  • SignalP: Signal peptide SP(Sec/SPI) length 23 aa
    • SP(Sec/SPI): 0.994988
    • TAT(Tat/SPI): 0.000427
    • LIPO(Sec/SPII): 0.002628
    • Cleavage Site: CS pos: 23-24. ANA-EN. Pr: 0.9829
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKKVISLFVAILSVLIFTDNANAENNKPEGVNENSNLIPVRQPDANYPGPVSDIARVKKLDNLIDGTKAPDVIKQLKDDNEVQNNAVKAKKSGIVSDCRHLLKHPDNLMDGTKDPKVIKQLKNANVTSNNGAVNPRVKANDTHTKSNKQMAKQQSIHLDSKSKSGHKQQLKELPKTGVNNESNTAIMALFSGLILLVVSLETRFIKLNSHQ

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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