From AureoWiki
Jump to navigation Jump to search

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_002614
  • pan locus tag?: SAUPAN006340000
  • symbol: JSNZ_002614
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_002614
  • symbol: JSNZ_002614
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2619264..2619464
  • length: 201
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    ATGATACTAGTAATGTTATCTCCATTATTAATCATATTCTTTATAGTGTTGTCTATTTTA
    GAAGAGCGTAAACGTACGAAGAAAAAGCAACTCGAGAAAGAAAAAGCAAATACACTAAAT
    CAAAATACAAATGACACGGAAAGTTCAAATCAAGAGCCGTCATTGCAGCAGGCTAAAGAA
    CAAAAAGATAACAAAGGATAA
    60
    120
    180
    201

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_002614
  • symbol: JSNZ_002614
  • description: hypothetical protein
  • length: 66
  • theoretical pI: 9.91647
  • theoretical MW: 7643.79
  • GRAVY: -0.756061

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Sporulation and germination stage III sporulation protein AF (TIGR02896; HMM-score: 13.9)
    Cellular processes Cellular processes Adaptations to atypical conditions phage shock protein B (TIGR02976; HMM-score: 13.8)
    and 1 more
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids D-galactonate transporter (TIGR00893; HMM-score: 10)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    no clan defined DUF4834; Domain of unknown function (DUF4834) (PF16118; HMM-score: 20.9)
    TMEM154; TMEM154 protein family (PF15102; HMM-score: 19.5)
    TMEM156; TMEM156 protein family (PF15106; HMM-score: 17.1)
    and 17 more
    Transporter (CL0375) Connexin; Connexin (PF00029; HMM-score: 16.5)
    TPR (CL0020) DUF6377; Domain of unknown function (DUF6377) (PF19904; HMM-score: 15.8)
    no clan defined Cadherin_C_2; Cadherin cytoplasmic C-terminal (PF16492; HMM-score: 15.7)
    GPR15L; G-protein coupled receptor ligand 15 (PF15854; HMM-score: 15.1)
    Ctr; Ctr copper transporter family (PF04145; HMM-score: 15)
    DUF6724; Family of unknown function (DUF6724) (PF20485; HMM-score: 14.6)
    PFF1_TM; Vacuolar membrane protease, transmembrane domain (PF22251; HMM-score: 14.1)
    DUF6249; Domain of unknown function (DUF6249) (PF19762; HMM-score: 13.2)
    YajC; Preprotein translocase subunit (PF02699; HMM-score: 12.4)
    MFS (CL0015) SLC52_ribofla_tr; Solute carrier family 52, riboflavin transporter (PF06237; HMM-score: 12.2)
    no clan defined GRP; Glycine rich protein family (PF07172; HMM-score: 12.2)
    MFS (CL0015) CLN3; CLN3 protein (PF02487; HMM-score: 12.1)
    no clan defined MotB_plug; Membrane MotB of proton-channel complex MotA/MotB (PF13677; HMM-score: 12.1)
    Piezo_TM1-24; Piezo TM1-24 (PF24871; HMM-score: 11.7)
    OAD_gamma; Oxaloacetate decarboxylase, gamma chain (PF04277; HMM-score: 10.7)
    GPCR_A (CL0192) SID-1_RNA_chan; dsRNA-gated channel SID-1 (PF13965; HMM-score: 10.5)
    no clan defined DUF6720; Family of unknown function (DUF6720) (PF20480; HMM-score: 10.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helix: 1
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9971
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0029
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.26118
    • TAT(Tat/SPI): 0.001766
    • LIPO(Sec/SPII): 0.195018
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MILVMLSPLLIIFFIVLSILEERKRTKKKQLEKEKANTLNQNTNDTESSNQEPSLQQAKEQKDNKG

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=JSNZ_002614&oldid=108255"