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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0204 [new locus tag: NWMN_RS01145 ]
  • pan locus tag?: SAUPAN001156000
  • symbol: rbsU
  • pan gene symbol?: rbsU
  • synonym:
  • product: ribose transporter RbsU

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_0204 [new locus tag: NWMN_RS01145 ]
  • symbol: rbsU
  • product: ribose transporter RbsU
  • replicon: chromosome
  • strand: -
  • coordinates: 261246..262136
  • length: 891
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    GTGTATAACATGAGCATTGTTGCATTACTTATCGGGTTAGGCCCCTTAATTGGCTGGGGC
    TTCTTCCCAACAGTCGCTTCAAAGTTTGGTGGTAAACCTGTACATCAAATTATCGGTGCT
    ACTGTAGGTACGTTAATCTTCGCTATTATATTAGCCGTAGTCACATCAAGTGGCTTCCCT
    ACTGGAACCAATTTGCTATTCGCCTTATTATCAGGTGCAGGATGGGGATTCGGACAAATC
    ATTACATTTAAAGCGTTCGAATTAGTCGGCTCATCTCGTGCCATGCCAGTCACAACAGCA
    TTCCAATTATTAGGCGCATCTTTATGGGGTGTCTTTGCATTAGGAAATTGGCCAGGCATT
    GGTCATAAAATCATTGGATTTACAGCTTTAGTCGTTATTCTAATTGGAGCGCGTATGACA
    GTTTGGAGTGAACGCAAAGAAGCAAGTAACGCCAAAAATTTACGTCGTGCAGTGGTACTT
    CTGTTAATTGGTGAATTTGGATACTGGTTATATTCAGCTGCACCGCAAGCAACTTCTATT
    GATGGCCTAACTGCCTTTTTACCTCAAGCAATGGGTATGGTAATTGTTGCAGTCATTTAT
    GGCTTTATGAATATGAAAGCAGAGAATCCATTCCGTAATAAAATTACGTGGTTACAAATT
    ATTTCAGGTTTCTTCTTTGCATTTGGTGCTTTAACATATCTTATTTCAGCACAACCTAAT
    ATGAATGGTTTAGCAACTGGATTTATTCTTTCTCAAACATCCGTTGTGCTTGCTACATTA
    ACTGGTATTTATTTCTTAAAACAACATAAAACGTCAAAAGAAATGGTTATTACAATCATC
    GGCTTAGTACTCATTTTAGTAGCCGCTTCTGTTACAGTATTTATAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    891

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_0204 [new locus tag: NWMN_RS01145 ]
  • symbol: RbsU
  • description: ribose transporter RbsU
  • length: 296
  • theoretical pI: 10.6791
  • theoretical MW: 31651.5
  • GRAVY: 0.880068

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids RhaT L-rhamnose-proton symporter family protein (TIGR00776; HMM-score: 258.3)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    DMT (CL0184) Sugar_transport; Sugar transport protein (PF06800; HMM-score: 364.2)
    and 2 more
    TMEM144; Transmembrane family, TMEM144 of transporters (PF07857; HMM-score: 16.1)
    no clan defined HIG_1_N; Hypoxia induced protein conserved region (PF04588; HMM-score: 9.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.059764
    • TAT(Tat/SPI): 0.002543
    • LIPO(Sec/SPII): 0.037389
  • predicted transmembrane helices (TMHMM): 10

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MYNMSIVALLIGLGPLIGWGFFPTVASKFGGKPVHQIIGATVGTLIFAIILAVVTSSGFPTGTNLLFALLSGAGWGFGQIITFKAFELVGSSRAMPVTTAFQLLGASLWGVFALGNWPGIGHKIIGFTALVVILIGARMTVWSERKEASNAKNLRRAVVLLLIGEFGYWLYSAAPQATSIDGLTAFLPQAMGMVIVAVIYGFMNMKAENPFRNKITWLQIISGFFFAFGALTYLISAQPNMNGLATGFILSQTSVVLATLTGIYFLKQHKTSKEMVITIIGLVLILVAASVTVFIK

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: CcpA regulon
    CcpA(TF)important in Carbon catabolism; RegPrecise 

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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