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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_0291 [new locus tag: NWMN_RS01665 ]
- pan locus tag?: SAUPAN000607000
- symbol: NWMN_0291
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_0291 [new locus tag: NWMN_RS01665 ]
- symbol: NWMN_0291
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 341183..342136
- length: 954
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 5330130 NCBI
- RefSeq: YP_001331325 NCBI
- BioCyc:
- MicrobesOnline: 3705822 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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901ATGACAAATCCCAAAATAACCAATCAGAATGATATTGATGAGTATATCGAGGGTTTAATC
TCTAAAGCAGAAAAACCAATAGAACAACTATTTGCTAATCGACTTAAAGAGATAAAACAA
ATCATCGCAGATATGTTTGAGAAATATCAAAATGATGATGTGTATGTTACATGGACTGAA
TTCAATAAATACAACAGGCTCAATAAGGAGTTAACTCGTATAGGTACAATGTTGACTGAT
GACTATAGGCAAGTAGCTAAGATGATTCAGAAGTCACAAGAAGATGCTTATATAGAAAAA
TTCCTTATGAGCCTTTATTTATATGAAATGGCGAGTCAAACATCTATGCAGTTTGATGTT
CCGAGTAAAGAGGTAATCAAATCAGCTATTGAACAACCTATTGAGTTCATTCGTTTAATG
CCAACACTACAAAAACATCGTGATGAAGTATTGAAAAAGATACGTATGCACATTACACAA
GGTATTATGAGTGGAGAGGGTTACTCTAAGATAGCTAAAGCAATACGTGATGATGTCGGC
ATGTCTAAAGCTCAATCATTGCGTGTGGCTCGTACAGAAGCAGGCAGAGCAATGTCACAA
GCTGGACTTGATAGCGCAATGGTTGCTAAAGATAACGGTTTGAAGATGAAGAAACGTTGG
AATGCTACTAAAGATACACGAACACGTGATACTCATCGTCATTTAGATGGGGAATCAGTG
GAAATAGATCAGAATTTTAAATCAAGTGGGTGTGTTGGGCAGGCGCCCAAGCTATTTATT
GGTGTAAACAGTGCGAAAGAGAATATTAATTGTCGTTGCAAATTACTTTATTATATTGAT
GAAAATGAATTGCCAACTGTAATGAGAGCACGTAAAGACGATGGTAAAAATGAAGTTATC
CCATTCATGACTTATCGTGAGTGGGAGAAATATAAGCGAAAAGGTGGTAATTGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_0291 [new locus tag: NWMN_RS01665 ]
- symbol: NWMN_0291
- description: hypothetical protein
- length: 317
- theoretical pI: 9.40445
- theoretical MW: 36758
- GRAVY: -0.712618
⊟Function[edit | edit source]
- TIGRFAM: Mobile and extrachromosomal element functions Prophage functions phage head morphogenesis protein, SPP1 gp7 family (TIGR01641; HMM-score: 45.9)
- TheSEED:
- PFAM: no clan defined Phage_Mu_F; Phage Mu protein F like protein (PF04233; HMM-score: 106.3)and 6 moreRNase_H (CL0219) DDE_Tnp_ISL3; Transposase (PF01610; HMM-score: 18.5)no clan defined PLC-beta_C; PLC-beta C terminal (PF08703; HMM-score: 15.1)UPF0181; Uncharacterised protein family (UPF0181) (PF03701; HMM-score: 13.5)DUF16; Protein of unknown function DUF16 (PF01519; HMM-score: 12.8)NADP_Rossmann (CL0063) DUF5129; Domain of unknown function (DUF5129) (PF17173; HMM-score: 12.4)no clan defined Med8; Mediator of RNA polymerase II transcription complex subunit 8 (PF10232; HMM-score: 12.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003417
- TAT(Tat/SPI): 0.000176
- LIPO(Sec/SPII): 0.000559
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MTNPKITNQNDIDEYIEGLISKAEKPIEQLFANRLKEIKQIIADMFEKYQNDDVYVTWTEFNKYNRLNKELTRIGTMLTDDYRQVAKMIQKSQEDAYIEKFLMSLYLYEMASQTSMQFDVPSKEVIKSAIEQPIEFIRLMPTLQKHRDEVLKKIRMHITQGIMSGEGYSKIAKAIRDDVGMSKAQSLRVARTEAGRAMSQAGLDSAMVAKDNGLKMKKRWNATKDTRTRDTHRHLDGESVEIDQNFKSSGCVGQAPKLFIGVNSAKENINCRCKLLYYIDENELPTVMRARKDDGKNEVIPFMTYREWEKYKRKGGN
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.