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Pangenome04-0298108BA0217611819-97685071193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

NCBI: 06-JUL-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0288 [new locus tag: NWMN_RS01650 ]
  • pan locus tag?: SAUPAN000560000
  • symbol: NWMN_0288
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_0288 [new locus tag: NWMN_RS01650 ]
  • symbol: NWMN_0288
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 338116..338577
  • length: 462
  • essential: unknown

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    GTGCTAGGACTCATAGAGGGCAAGAGCCAACGGAAAGCATATATTGACGCAGGGTATTCG
    ACTAAAGGTAAGAGTGGGGAATATCTAGATAAAGAAGCGAGTACACTTTTTAAAAATCGG
    AAGGTTTCCGGAAGGTACGAAAAATTGCGTCAAGAAGTAGCTGAACAATCAAAATGGACA
    CGCCAAAAGGCCTTTGAAGAATATGAGTGGCTAAAGAATGTAGCTAAGAATGACATTGAA
    ATAGAGGGAGTGAAGAAAGCGACAGCTGATGCATTCCTCGCTAGTTTAGATGGTATGAAT
    AGAATGACGTTAGGTAACGAAGTTTTAGCTAACAAGAAAATAGAAACTGAAATTAAGATG
    CTTGAGAAGAAGATTGAACAAATAGATAAAGGTGACAGTGGAACAGAAGATAAAATCAAA
    CAACTTCACGACGCAATAACGGAAGTGATCGTCAATGAATAA
    60
    120
    180
    240
    300
    360
    420
    462

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_0288 [new locus tag: NWMN_RS01650 ]
  • symbol: NWMN_0288
  • description: hypothetical protein
  • length: 153
  • theoretical pI: 7.50858
  • theoretical MW: 17405.7
  • GRAVY: -0.798039

Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein fate Protein folding and stabilization prefoldin, alpha subunit (TIGR00293; HMM-score: 20.5)
  • TheSEED:  
    Phage protein
  • PFAM:
    no clan defined Terminase_2; Terminase small subunit (PF03592; HMM-score: 23.1)
    and 4 more
    Prefoldin (CL0200) Prefoldin; Prefoldin subunit (PF02996; HMM-score: 16.5)
    no clan defined XhlA; Haemolysin XhlA (PF10779; HMM-score: 15)
    FtsL (CL0225) DivIC; Septum formation initiator (PF04977; HMM-score: 14.5)
    no clan defined Fib_alpha; Fibrinogen alpha/beta chain family (PF08702; HMM-score: 11.4)

Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009965
    • TAT(Tat/SPI): 0.00087
    • LIPO(Sec/SPII): 0.003116
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MLGLIEGKSQRKAYIDAGYSTKGKSGEYLDKEASTLFKNRKVSGRYEKLRQEVAEQSKWTRQKAFEEYEWLKNVAKNDIEIEGVKKATADAFLASLDGMNRMTLGNEVLANKKIETEIKMLEKKIEQIDKGDSGTEDKIKQLHDAITEVIVNE

Experimental data[edit | edit source]

  • experimentally validated: no data available

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]