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NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_0361 [new locus tag: NWMN_RS15105 ]
- pan locus tag?: SAUPAN001960000
- symbol: NWMN_0361
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_0361 [new locus tag: NWMN_RS15105 ]
- symbol: NWMN_0361
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 410725..411036
- length: 312
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5330195 NCBI
- RefSeq: YP_001331395 NCBI
- BioCyc:
- MicrobesOnline: 3705892 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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301ATGCTTGGAATGATAAGTTTATTGATAGAGAGTACATATTCACAAATACGTCTGGTAGCC
CTATCGACTCGAACAAAATTAGCCACATTATTAAAGGGGGGCGCTGATATTAGTTCTATT
AAGAAACCTATAACGACGCATACATTACATCATTCGCATATATCTACACTTGCTCAATTA
GGAATTAACTTAAAAGCAATGCAAGAGCATGTAGGTCATTCAGATTATAAAAAAAATCTA
GAGATATACACACATGTTACTAATCAGATGGCGAAAGATATGATGAATAAATTTGAACGA
TTGGGGAGTTAA60
120
180
240
300
312
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_0361 [new locus tag: NWMN_RS15105 ]
- symbol: NWMN_0361
- description: hypothetical protein
- length: 103
- theoretical pI: 10.3
- theoretical MW: 11502.4
- GRAVY: -0.146602
⊟Function[edit | edit source]
- TIGRFAM: DNA metabolism DNA replication, recombination, and repair integron integrase (TIGR02249; HMM-score: 50.7)Mobile and extrachromosomal element functions Other integron integrase (TIGR02249; HMM-score: 50.7)DNA metabolism DNA replication, recombination, and repair tyrosine recombinase XerD (TIGR02225; HMM-score: 48.1)and 1 moreDNA metabolism DNA replication, recombination, and repair tyrosine recombinase XerC (TIGR02224; HMM-score: 30.3)
- TheSEED: data available for NCTC8325
- PFAM: DNA-mend (CL0382) Phage_integrase; Phage integrase family (PF00589; HMM-score: 36.3)and 1 moreno clan defined DUF3102; Protein of unknown function (DUF3102) (PF11300; HMM-score: 14.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.017319
- TAT(Tat/SPI): 0.002022
- LIPO(Sec/SPII): 0.005988
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MLGMISLLIESTYSQIRLVALSTRTKLATLLKGGADISSIKKPITTHTLHHSHISTLAQLGINLKAMQEHVGHSDYKKNLEIYTHVTNQMAKDMMNKFERLGS
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.