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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0556 [new locus tag: NWMN_RS03185 ]
  • pan locus tag?: SAUPAN002374000
  • symbol: NWMN_0556
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_0556 [new locus tag: NWMN_RS03185 ]
  • symbol: NWMN_0556
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 640212..640565
  • length: 354
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    GTGGGTAGCAATATGAAAAATACATTCCTTATTTGTGATGAATGTCAGGCAGTCAATATA
    AGAACGTTACAAAAGAAGTTGGAAAAATTAGATCCCGATGCTGAAATCGTGATAGGTTGT
    CAATCTTATTGTGGACCTGGACGCCGAAAAACATTCACTTTTGTTAATAACCGCCCACTG
    GCTGCGCTTACTGAAGAAGAATTAATCGAAAAAGTTTCTCAACAATTAAAGAAACCACGT
    GATCCTGAAGAAGAAGAGCGTTTAAGAAAACGACATGAAGAACGTAAACGTCGTAAAGAA
    GAACAAGATAGAAAGCTTAAAGAAAAATTAGAAAAGCGAAAAGCACAACAATAA
    60
    120
    180
    240
    300
    354

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_0556 [new locus tag: NWMN_RS03185 ]
  • symbol: NWMN_0556
  • description: hypothetical protein
  • length: 117
  • theoretical pI: 9.89847
  • theoretical MW: 13924.9
  • GRAVY: -1.29145

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein synthesis tRNA aminoacylation glutamyl-tRNA(Gln) amidotransferase, subunit D (TIGR02153; EC 6.3.5.-; HMM-score: 8.9)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    no clan defined DUF1450; Protein of unknown function (DUF1450) (PF07293; HMM-score: 32.3)
    and 3 more
    Zn_Beta_Ribbon (CL0167) DUF2072; Zn-ribbon containing protein (PF09845; HMM-score: 15.7)
    Tnp_zf-ribbon_2; DDE_Tnp_1-like zinc-ribbon (PF13842; HMM-score: 14.2)
    BCLiA (CL0551) APG6; Autophagy protein Apg6 (PF04111; HMM-score: 8.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 0.83
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.012249
    • TAT(Tat/SPI): 0.000352
    • LIPO(Sec/SPII): 0.003759
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MGSNMKNTFLICDECQAVNIRTLQKKLEKLDPDAEIVIGCQSYCGPGRRKTFTFVNNRPLAALTEEELIEKVSQQLKKPRDPEEEERLRKRHEERKRRKEEQDRKLKEKLEKRKAQQ

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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