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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0777 [new locus tag: NWMN_RS04395 ]
  • pan locus tag?: SAUPAN002823000
  • symbol: NWMN_0777
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_0777 [new locus tag: NWMN_RS04395 ]
  • symbol: NWMN_0777
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 867365..868243
  • length: 879
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGCTAAACATTCAAGACGTTAGTCATCTTTCTAAAAAGGAGCAAAAAGCATATAACCGT
    TTCGTAGAATCTGTAGAAAACGGTAATTTACCAGTACTACCATGTATTGAAATGGATCTA
    AAAGAGATGCAAGAAGAAACATTAAACCAGAGTAAGATTGGTGGAATGCCATTTTTAAAA
    TCTTTTAAAGATATACCATTAGATGAAAATAATGTACCAATGGTATTGCTAGCACAGATT
    AATTTGGATGATCTTCCAGAACAACAAGAATTATTTCCTGTAAAAGAAGGGATATTGCAG
    TTTTGGATTAGTTCAGAAGATCAAATGTATGGAATGTCTGAAAATTTAAAGGGAAACAAT
    ATAAACTCAAGGCTTGTTTATATAAAAGAGCCAATTACAGATTTATCACTCGAAAATATT
    CAAGCGCATTTGAAGTCATTAGATGCTGATAATGAGGATATCCCGTTCAGTGGAGCATTT
    TCTATAGAATTTAGATTGTCGAAACAAACTATTACATGTACTGATTATAAGTACGATGAG
    GACGTGCTTGCATTGTGGAATAAAGTCAATCCATCCTTCGCGCTAAAATCAATGTTTGGT
    GGTTATGATGAATTGATGGAACCTGTGTGTAACACATTTACTGCTAAGGAACCATTTAAT
    CAACTTGGTGGTTATCCATATTTTGACCAAATAGATCCAAGAACGAACGATCAAGAACTG
    AAAATGTATGATAGAGTCTTACTGCAAATTGATTCTACAAGAGATGGTAATTCTTCGATT
    ATATGGGGTGATTTAGGTATTGCCAATATCTTAGTGAAATCTACTGACCTTGAGGCTATG
    AAGTTTGATGATTACATGTATTCATGGGATTGCAGCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    879


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_0777 [new locus tag: NWMN_RS04395 ]
  • symbol: NWMN_0777
  • description: hypothetical protein
  • length: 292
  • theoretical pI: 4.09245
  • theoretical MW: 33500.7
  • GRAVY: -0.408562

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01108697: hypothetical protein
  • PFAM:
    no clan defined DUF1963; Domain of unknown function (DUF1963) (PF09234; HMM-score: 188.9)
    and 1 more
    Moesin_tail (CL0719) Ermin; Ermin (PF20491; HMM-score: 13.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.7185
    • Cytoplasmic Membrane Score: 0.1001
    • Cell wall & surface Score: 0.0009
    • Extracellular Score: 0.1804
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00189
    • TAT(Tat/SPI): 0.000202
    • LIPO(Sec/SPII): 0.000347
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLNQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLDDLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQAHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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