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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002823000
- symbol?: —
- synonym:
- description?: DUF1963 domain-containing protein
- DUF1963 domain-containing protein
- putative DUF1963-containing protein
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3279982..3280722
- synteny block?: BlockID0020140
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0789
08BA02176:
C248_0903
11819-97:
MS7_0861
6850:
RSAU_000784
71193:
ST398NM01_0889
ECT-R 2:
ECTR2_761
ED133:
SAOV_0851
ED98:
SAAV_0780
HO 5096 0412:
SAEMRSA15_07360
JH1:
SaurJH1_0851
JH9:
SaurJH9_0834
JKD6008:
SAA6008_00825
JKD6159:
SAA6159_00765
LGA251:
SARLGA251_07400
M013:
M013TW_0800
MRSA252:
SAR0865
MSHR1132:
SAMSHR1132_07580
MSSA476:
SAS0774
Mu3:
SAHV_0830
Mu50:
SAV0834
MW2:
MW0787
RF122:
SAB0765
ST398:
SAPIG0889
T0131:
SAT0131_00909 (agrD)
TCH60:
HMPREF0772_12369
TW20:
SATW20_08830
USA300_TCH1516:
USA300HOU_0842
VC40:
SAVC_03695
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLNQSKIGGMPFLK
N315 MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLSQSKIGGMPFLK
NCTC8325 MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLNQSKIGGMPFLK
Newman MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLNQSKIGGMPFLK
USA300_FPR3757 MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLNQSKIGGMPFLK
************************************************.***********
COL SFKDIPLDENNVPMVLLAQINLDDLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNN
N315 SFKDIPLDENNVPMVLLAQINLNDLPEQQELFPVNEGILQFWISSEDQMYGMSENLKGNN
NCTC8325 SFKDIPLDENNVPMVLLAQINLDDLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNN
Newman SFKDIPLDENNVPMVLLAQINLDDLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNN
USA300_FPR3757 YFKDIPLDENNVPMVLLAQINLDDLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNN
*********************:***********:*************************
COL INSRLVYIKEPITDLSLENIQAHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDE
N315 INSRLVYIKEPITDLSLENIQVHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDE
NCTC8325 INSRLVYIKEPITDLSLENIQAHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDE
Newman INSRLVYIKEPITDLSLENIQAHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDE
USA300_FPR3757 INSRLVYIKEPITDLSLENIQAHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDE
*********************.**************************************
COL DVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQEL
N315 DVLALWNKVNPSFALK----------------------FNH-------------------
NCTC8325 DVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQEL
Newman DVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQEL
USA300_FPR3757 DVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQEL
**************** **:
COL KMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
N315 ------------------SII---------------------------NNSS
NCTC8325 KMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
Newman KMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
USA300_FPR3757 KMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
*** :.*