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NCBI: 06-JUL-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0790 [new locus tag: NWMN_RS04470 ]
  • pan locus tag?: SAUPAN003014000
  • symbol: NWMN_0790
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_0790 [new locus tag: NWMN_RS04470 ]
  • symbol: NWMN_0790
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 880276..880590
  • length: 315
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGTATTTTGTTTTAGCAATATTTACAATAATCAGTGCCAGTGTAAGTTTAGGTTATTCA
    ATTCAAGCATGTGCATCTAGCCATAATATAAATGCATATTATGCACTTAGTCGAAGCTTA
    CCTTTATTTTTATTAGCTATTTTTTCTTTAGTCATTCATAGTGCTATATTTTTGATAACT
    ATATCCATTGCAATGATCTTAGTTCAATTTTTAGATGCGATTGTTGGTTATAAAAGTGAA
    GATGTCTTTAAAACTTATGGTCCATTAGCAACATCTGTAGTGAACTTAATATTATTAATA
    GTTTTCTTATTTTAA
    60
    120
    180
    240
    300
    315

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_0790 [new locus tag: NWMN_RS04470 ]
  • symbol: NWMN_0790
  • description: hypothetical protein
  • length: 104
  • theoretical pI: 7.50298
  • theoretical MW: 11415.6
  • GRAVY: 1.39712

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    no clan defined PIRT; Phosphoinositide-interacting protein family (PF15099; HMM-score: 14.7)
    and 2 more
    DUF996; Protein of unknown function (DUF996) (PF06195; HMM-score: 11.5)
    YtpI; YtpI-like protein (PF14007; HMM-score: 8)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0
    • Signal peptide possibility: 1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: Signal peptide LIPO(Sec/SPII) length 23 aa
    • SP(Sec/SPI): 0.020046
    • TAT(Tat/SPI): 0.001283
    • LIPO(Sec/SPII): 0.780004
    • Cleavage Site: CS pos: 23-24. IQA-CA. Pr: 0.7588
  • predicted transmembrane helices (TMHMM): 3

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MYFVLAIFTIISASVSLGYSIQACASSHNINAYYALSRSLPLFLLAIFSLVIHSAIFLITISIAMILVQFLDAIVGYKSEDVFKTYGPLATSVVNLILLIVFLF

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]