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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL0920 [new locus tag: SACOL_RS04720 ]
  • pan locus tag?: SAUPAN003014000
  • symbol: SACOL0920
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL0920 [new locus tag: SACOL_RS04720 ]
  • symbol: SACOL0920
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 927097..927411
  • length: 315
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGTATTTTGTTTTAGCAATATTTACAATAATCAGTGCCAGTGTAAGTTTAGGTTATTCA
    ATTCAAGCATGTGCATCTAGCCATAATATAAATGCATATTATGCACTTAGTCGAAGCTTA
    CCTTTATTTTTATTAGCTATTTTTTCTTTAGTCATTCATAGTGCTATATTTTTGATAACT
    ATATCCATTGCAATGATCTTAGTTCAATTTTTAGATGCGATTGTTGGTTATAAAAGTGAA
    GATGTCTTTAAAACTTATGGTCCATTAGCAACATCTGTAGTGAACTTAATATTATTAATA
    GTTTTCTTATTTTAA
    60
    120
    180
    240
    300
    315


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL0920 [new locus tag: SACOL_RS04720 ]
  • symbol: SACOL0920
  • description: hypothetical protein
  • length: 104
  • theoretical pI: 7.50298
  • theoretical MW: 11415.6
  • GRAVY: 1.39712

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • hypothetical protein
  • PFAM:
    no clan defined DUF996; Protein of unknown function (DUF996) (PF06195; HMM-score: 11.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9894
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0104
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0
    • Signal peptide possibility: 1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: Signal peptide LIPO(Sec/SPII) length 23 aa
    • SP(Sec/SPI): 0.020046
    • TAT(Tat/SPI): 0.001283
    • LIPO(Sec/SPII): 0.780004
    • Cleavage Site: CS pos: 23-24. IQA-CA. Pr: 0.7588
  • predicted transmembrane helices (TMHMM): 3

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MYFVLAIFTIISASVSLGYSIQACASSHNINAYYALSRSLPLFLLAIFSLVIHSAIFLITISIAMILVQFLDAIVGYKSEDVFKTYGPLATSVVNLILLIVFLF

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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