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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1683 [new locus tag: NWMN_RS09440 ]
  • pan locus tag?: SAUPAN004507000
  • symbol: NWMN_1683
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_1683 [new locus tag: NWMN_RS09440 ]
  • symbol: NWMN_1683
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1878560..1879330
  • length: 771
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    TTGGGTTTTATCAAACGTAAACGAATGCCAATTGAATATTTTACGCATCAATTCGAAGAA
    ATTACATATTTGTCAGATGACTTACAAGTAAAAGCTTTAATGATGACACCACATCATGAA
    GTAAATCGCATTGTAGTTTATTTGCGAGGTGGCAAAGGTCAAGTAGGACGTGTGCGCGCA
    GGTAGATTAATGCAATTTTCAGATAGTCAAACTTTAGTGATTGGGCCATACTACCGAGGT
    AACAATGGGAGTGAAGGCAAAGACGAATTTTACCGTGGCGATTTAAATGATGTGACGCAA
    TTATTAAGGTTGCTACATGATAAATATCCACATGCATTTATCCACATGGTTGGTTTTTCG
    CGAGGTGGTTTACAAGGATTGTTGACATTTCAAGACTTACCAGTAACAAGTTATACAATC
    TGGGGTGGTGTCTCAGATATTGATTTAATGTATGAAGAACGTGTCGATTTAAGAGGCATG
    CTACGAAGAATGATTGGTCATCCGAAAAAAGATCGAGCGGCATATGAGGCACGCCAAGCG
    ATTCCAAACATTAATGAAAACAGTCCGCCAATATTAATTGTACATGGAGGGAAAGACCAG
    CAAGTTGGTATTCATCATGCGTATTATTTAGCGGACCAACTAGAGTTAAAAGGTGCCACG
    CATGAAACATTTTATCAAATGGCAGAAGGACATGTGCCAAGACCACCAGCGATGGTTGAA
    ACATTGACTTATATTAAAGAGTTTATGAACCAAGTTGAGTCGCATAGCTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    771

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_1683 [new locus tag: NWMN_RS09440 ]
  • symbol: NWMN_1683
  • description: hypothetical protein
  • length: 256
  • theoretical pI: 7.52881
  • theoretical MW: 29379.4
  • GRAVY: -0.441797

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    AB_hydrolase (CL0028) Peptidase_S9; Prolyl oligopeptidase family (PF00326; HMM-score: 41.5)
    and 4 more
    Abhydrolase_1; alpha/beta hydrolase fold (PF00561; HMM-score: 19.8)
    NADP_Rossmann (CL0063) Epimerase; NAD dependent epimerase/dehydratase family (PF01370; HMM-score: 18.1)
    AB_hydrolase (CL0028) Hydrolase_4; Serine aminopeptidase, S33 (PF12146; HMM-score: 15.3)
    Abhydrolase_6; Alpha/beta hydrolase family (PF12697; HMM-score: 13.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001653
    • TAT(Tat/SPI): 0.000134
    • LIPO(Sec/SPII): 0.000206
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MGFIKRKRMPIEYFTHQFEEITYLSDDLQVKALMMTPHHEVNRIVVYLRGGKGQVGRVRAGRLMQFSDSQTLVIGPYYRGNNGSEGKDEFYRGDLNDVTQLLRLLHDKYPHAFIHMVGFSRGGLQGLLTFQDLPVTSYTIWGGVSDIDLMYEERVDLRGMLRRMIGHPKKDRAAYEARQAIPNINENSPPILIVHGGKDQQVGIHHAYYLADQLELKGATHETFYQMAEGHVPRPPAMVETLTYIKEFMNQVESHS

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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