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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL1840 [new locus tag: SACOL_RS09440 ]
- pan locus tag?: SAUPAN004507000
- symbol: SACOL1840
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL1840 [new locus tag: SACOL_RS09440 ]
- symbol: SACOL1840
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1895719..1896489
- length: 771
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3238600 NCBI
- RefSeq: YP_186671 NCBI
- BioCyc: see SACOL_RS09440
- MicrobesOnline: 913284 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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721TTGGGTTTTATCAAACGTAAACGAATGCCAATTGAATATTTTACGCATCAATTCGAAGAA
ATTACATATTTGTCAGATGACTTACAAGTAAAAGCTTTAATGATGACACCACATCATGAA
GTAAATCGCATTGTAGTTTATTTGCGAGGTGGCAAAGGTCAAGTAGGACGTGTGCGCGCA
GGTAGATTAATGCAATTTTCAGATAGTCAAACTTTAGTGATTGGGCCATACTACCGAGGT
AACAATGGGAGTGAAGGCAAAGACGAATTTTACCGTGGCGATTTAAATGATGTGACGCAA
TTATTAAGGTTGCTACATGATAAATATCCACATGCATTTATCCACATGGTTGGTTTTTCG
CGAGGTGGTTTACAAGGATTGTTGACATTTCAAGACTTACCAGTAACAAGTTATACAATC
TGGGGTGGTGTCTCAGATATTGATTTAATGTATGAAGAACGTGTCGATTTAAGAGGCATG
CTACGAAGAATGATTGGTCATCCGAAAAAAGATCGAGCGGCATATGAGGCACGCCAAGCG
ATTCCAAACATTAATGAAAACAGTCCGCCAATATTAATTGTACATGGAGGGAAAGACCAG
CAAGTTGGTATTCATCATGCGTATTATTTAGCGGACCAACTAGAGTTAAAAGGTGCCACG
CATGAAACATTTTATCAAATGGCAGAAGGACATGTGCCAAGACCACCAGCGATGGTTGAA
ACATTGACTTATATTAAAGAGTTTATGAACCAAGTTGAGTCGCATAGCTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL1840 [new locus tag: SACOL_RS09440 ]
- symbol: SACOL1840
- description: hypothetical protein
- length: 256
- theoretical pI: 7.52881
- theoretical MW: 29379.4
- GRAVY: -0.441797
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
- PFAM: AB_hydrolase (CL0028) Peptidase_S9; Prolyl oligopeptidase family (PF00326; HMM-score: 41.5)and 4 moreAbhydrolase_1; alpha/beta hydrolase fold (PF00561; HMM-score: 19.8)NADP_Rossmann (CL0063) Epimerase; NAD dependent epimerase/dehydratase family (PF01370; HMM-score: 18.1)AB_hydrolase (CL0028) Hydrolase_4; Serine aminopeptidase, S33 (PF12146; HMM-score: 15.3)Abhydrolase_6; Alpha/beta hydrolase family (PF12697; HMM-score: 13.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001653
- TAT(Tat/SPI): 0.000134
- LIPO(Sec/SPII): 0.000206
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MGFIKRKRMPIEYFTHQFEEITYLSDDLQVKALMMTPHHEVNRIVVYLRGGKGQVGRVRAGRLMQFSDSQTLVIGPYYRGNNGSEGKDEFYRGDLNDVTQLLRLLHDKYPHAFIHMVGFSRGGLQGLLTFQDLPVTSYTIWGGVSDIDLMYEERVDLRGMLRRMIGHPKKDRAAYEARQAIPNINENSPPILIVHGGKDQQVGIHHAYYLADQLELKGATHETFYQMAEGHVPRPPAMVETLTYIKEFMNQVESHS
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
PLoS One: 2009, 4(12);e8176
[PubMed:19997597] [WorldCat.org] [DOI] (I e) - ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
The Staphylococcus aureus proteome.
Int J Med Microbiol: 2014, 304(2);110-20
[PubMed:24439828] [WorldCat.org] [DOI] (I p)