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NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_1695 [new locus tag: NWMN_RS09520 ]
- pan locus tag?: SAUPAN004526000
- symbol: NWMN_1695
- pan gene symbol?: —
- synonym:
- product: putative transposase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_1695 [new locus tag: NWMN_RS09520 ]
- symbol: NWMN_1695
- product: putative transposase
- replicon: chromosome
- strand: -
- coordinates: 1889301..1889444
- length: 144
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5331007 NCBI
- RefSeq: YP_001332729 NCBI
- BioCyc:
- MicrobesOnline: 3707247 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121ATGACAAGAGAAAGAAGATCATTTAGTTCAGAGTTTAAGTTACAAATGGTTAGATTATAT
AAAAATGGTAAGCCTAGGAATGAAATTATACGCGAGTATGATTTCACACCTTCGACGTTT
GTAAATGGCGGTTATAAAATGTAG60
120
144
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_1695 [new locus tag: NWMN_RS09520 ]
- symbol: NWMN_1695
- description: putative transposase
- length: 47
- theoretical pI: 10.6298
- theoretical MW: 5709.53
- GRAVY: -0.974468
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for NCTC8325, USA300_FPR3757
- PFAM: HTH (CL0123) HTH_Tnp_1; Transposase (PF01527; HMM-score: 34.9)and 6 moreHTH_7; Helix-turn-helix domain of resolvase (PF02796; HMM-score: 22.4)HTH_28; Helix-turn-helix domain (PF13518; HMM-score: 20.7)CENP-B_N; CENP-B N-terminal DNA-binding domain (PF04218; HMM-score: 17.4)HTH_23; Homeodomain-like domain (PF13384; HMM-score: 16.7)BrkDBD; Brinker DNA-binding domain (PF09607; HMM-score: 14.2)no clan defined DUF3734; Patatin phospholipase (PF12536; HMM-score: 13.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.079257
- TAT(Tat/SPI): 0.010139
- LIPO(Sec/SPII): 0.007873
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MTRERRSFSSEFKLQMVRLYKNGKPRNEIIREYDFTPSTFVNGGYKM
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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