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NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_1797 [new locus tag: NWMN_RS10290 ]
- pan locus tag?: SAUPAN001472000
- symbol: NWMN_1797
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_1797 [new locus tag: NWMN_RS10290 ]
- symbol: NWMN_1797
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2008764..2009048
- length: 285
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5331084 NCBI
- RefSeq: YP_001332831 NCBI
- BioCyc:
- MicrobesOnline: 3707385 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241ATGAACTATGAAACAGGGGTCCAACTAGGTGTAATGGACGCTAGGTTGAAGAAGATGAGA
AAACAACGTGATGAGTACAAGAAGCAACGTGATGAGCTTATTGGGGATATAGGTAAGTTA
AGAGAACGCAACAAAGAGCTGGAGAAGAAAGCAAGTGCATGGGATAGGTATTGCAAGAGC
GTTGAAAAAGATTTAATAAACGAATTTGGCAAAGATGGTGAAAGAGTTAAATTTGGAATG
GAATTAAACAATAAAACTTTTATGGAGGAAGACACTAATGAATAA60
120
180
240
285
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_1797 [new locus tag: NWMN_RS10290 ]
- symbol: NWMN_1797
- description: hypothetical protein
- length: 94
- theoretical pI: 8.4404
- theoretical MW: 11224.7
- GRAVY: -1.32128
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for NCTC8325
- PFAM: no clan defined BLOC1_2; Biogenesis of lysosome-related organelles complex-1 subunit 2 (PF10046; HMM-score: 20.4)Phage_GP20; Phage minor structural protein GP20 (PF06810; HMM-score: 17.1)and 6 moreIncA; IncA protein (PF04156; HMM-score: 14.9)Cep57_CLD_2; Centrosome localisation domain of PPC89 (PF14197; HMM-score: 14.8)Ax_dynein_light; Axonemal dynein light chain (PF10211; HMM-score: 14.3)TMF_DNA_bd; TATA element modulatory factor 1 DNA binding (PF12329; HMM-score: 13.2)FtsL (CL0225) DivIC; Septum formation initiator (PF04977; HMM-score: 12.8)no clan defined PP28; Casein kinase substrate phosphoprotein PP28 (PF10252; HMM-score: 12.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.007595
- TAT(Tat/SPI): 0.000686
- LIPO(Sec/SPII): 0.002287
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNYETGVQLGVMDARLKKMRKQRDEYKKQRDELIGDIGKLRERNKELEKKASAWDRYCKSVEKDLINEFGKDGERVKFGMELNNKTFMEEDTNE
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.