PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 06-JUL-2013

⊟Summary

• organism: Staphylococcus aureus Newman
• locus tag: NWMN_1805 [new locus tag: NWMN_RS10350 ]
• pan locus tag^?: SAUPAN001750000
• symbol: NWMN_1805
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: NWMN_1805 [new locus tag: NWMN_RS10350 ]
• symbol: NWMN_1805
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 2012737..2013507
• length: 771
• essential: unknown

⊟Accession numbers

• Gene ID: 5331092 NCBI
• RefSeq: YP_001332839 NCBI
• BioCyc:
• MicrobesOnline: 3707393 MicrobesOnline

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

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  ATGGCAACATTTAGAACGATAAAAGAAAGTGGCGATTTTGTAACTGTGCATAAATCTTTT
  GTGTTCGATAGTAATTTAAGTGCTAAAGCTAAAGGGATATTATTGTATTTCCTAAGTCGT
  CCTGACAATTGGCAAATATACACGTCAGAAGTAGTTAAACATATGAATGATGGACAAAAA
  TCAATCAATAGTGGCGTTCAAGAACTTATGGATAATAAATATGTTCACAGAATACAAAAA
  AGAGCTGAAAACGGTGTGTTTAAAGGTTTTGAATACTTAGTTTACGAAAAACCAACCGAA
  ATGCCATTTTCGGAAAACGGATTATCGGCAAACGGGTTTTCGGAAAACGGAAAAACGGAA
  AACCGAAAAGGGCGTACTACTAATAATAATAGTACTAATAATGATTTAACTAATAATAAC
  AATACTAATAATGATGGAAGTATATTGTCGGGCAACCCGACTGTGTATTCCATTCCCTAT
  AAAGAAATTATCGAATACTTAAATAAAAAAGCAGGAAAGCATTTTAAACATAATACAGCT
  AAAACAAAAGATTTTATTAAAGCAAGATGGAATCAAGATTTTAGGTTGGAGGATTTTAAA
  AAGGTGATTGATATCAAAACAGCTGAATGGTTAAACACGGATAGCGATAAATACCTTAGA
  CCAGAAACACTTTTTGGCAGTAAATTTGAGGGGTACCTCAATCAAAAAATACAACCAACT
  GGCACGGATCAATTGGAACGCATGAAGTACGACGAAAGTTATTGGGATTAG
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⊟Protein

⊟General

• locus tag: NWMN_1805 [new locus tag: NWMN_RS10350 ]
• symbol: NWMN_1805
• description: hypothetical protein
• length: 256
• theoretical pI: 9.24218
• theoretical MW: 29656.8
• GRAVY: -0.933984

⊟Function

• TIGRFAM:
  Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage conserved hypothetical protein, C-terminal domain (TIGR02220; HMM-score: 131.3)
• TheSEED:
• PFAM:
  no clan defined Phg_2220_C; Conserved phage C-terminus (Phg_2220_C) (PF09524; HMM-score: 107.6)
  and 1 more
  Telomerase_RBD; Telomerase ribonucleoprotein complex - RNA binding domain (PF12009; HMM-score: 13.5)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 2.5
  • Cytoplasmic Membrane Score: 2.5
  • Cellwall Score: 2.5
  • Extracellular Score: 2.5
  • Internal Helices: 0
• LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 1
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.003258
  • TAT(Tat/SPI): 0.000334
  • LIPO(Sec/SPII): 0.000492
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 151222017 NCBI
• RefSeq: YP_001332839 NCBI
• UniProt: A0A0H3KHG9 UniProt

⊟Protein sequence

• MATFRTIKESGDFVTVHKSFVFDSNLSAKAKGILLYFLSRPDNWQIYTSEVVKHMNDGQKSINSGVQELMDNKYVHRIQKRAENGVFKGFEYLVYEKPTEMPFSENGLSANGFSENGKTENRKGRTTNNNSTNNDLTNNNNTNNDGSILSGNPTVYSIPYKEIIEYLNKKAGKHFKHNTAKTKDFIKARWNQDFRLEDFKKVIDIKTAEWLNTDSDKYLRPETLFGSKFEGYLNQKIQPTGTDQLERMKYDESYWD

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: NWMN_1804 < NWMN_1805

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications