Jump to navigation
Jump to search
NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_1879 [new locus tag: NWMN_RS15465 ]
- pan locus tag?: SAUPAN005025000
- symbol: NWMN_1879
- pan gene symbol?: truncated lytA
- synonym:
- product: truncated phage amidase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_1879 [new locus tag: NWMN_RS15465 ]
- symbol: NWMN_1879
- product: truncated phage amidase
- replicon: chromosome
- strand: -
- coordinates: 2091215..2091469
- length: 255
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5331145 NCBI
- RefSeq: YP_001332913 NCBI
- BioCyc:
- MicrobesOnline: 3707467 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241TTGATATCCTTTTTGCCCTTCACTCGATACATATATCTCAACAACATAGAAATATTACAG
TCGCTACACCGCATCTTAAATGGTGTGGTTATTTTTATTGGAAGTGTGTATCAGGTATCA
GTAATGTTAAAACACCAGCTAAAAATGAAAAGAATTCACCAGTGCCAGCAGGTTATACAC
TCGATAAAAACAATGTACCGTATAAAAAAGAGACTGGTTATTACACAGTTGCCAATGTTA
AAGGTAATAACGTGA60
120
180
240
255
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_1879 [new locus tag: NWMN_RS15465 ]
- symbol: NWMN_1879
- description: truncated phage amidase
- length: 84
- theoretical pI: 11.2121
- theoretical MW: 10010.2
- GRAVY: 0.397619
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for N315
- PFAM:
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.32
- Cytoplasmic Membrane Score: 9.55
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helix: 1
- LocateP: N-terminally anchored (No CS)
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: 2
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003588
- TAT(Tat/SPI): 0.000311
- LIPO(Sec/SPII): 0.000758
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MISFLPFTRYIYLNNIEILQSLHRILNGVVIFIGSVYQVSVMLKHQLKMKRIHQCQQVIHSIKTMYRIKKRLVITQLPMLKVIT
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.