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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1878 [new locus tag: NWMN_RS10805 ]
  • pan locus tag?: SAUPAN005022000
  • symbol: NWMN_1878
  • pan gene symbol?: —
  • synonym:
  • product: truncated phage amidase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_1878 [new locus tag: NWMN_RS10805 ]
  • symbol: NWMN_1878
  • product: truncated phage amidase
  • replicon: chromosome
  • strand: -
  • coordinates: 2091012..2091308
  • length: 297
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    GTGCCAGCAGGTTATACACTCGATAAAAACAATGTACCGTATAAAAAAGAGACTGGTTAT
    TACACAGTTGCCAATGTTAAAGGTAATAACGTGAGGGATGGCTATTCAACTAATTCAAGA
    ATTACAGGTGTATTACCCAATAACGCAACTATCAAATATGACGGCGCATATTGCATTAAT
    GGCTATAGATGGATTACTTATATTGCTAATAGTGGACAACGTCGTTATATAGCGACAGGA
    GAGGTAGACAAGGCAGGTAATAGAATAAGCAGTTTTGGTAAGTTTAGTGCAGTTTGA
    60
    120
    180
    240
    297

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_1878 [new locus tag: NWMN_RS10805 ]
  • symbol: NWMN_1878
  • description: truncated phage amidase
  • length: 98
  • theoretical pI: 9.95644
  • theoretical MW: 10832
  • GRAVY: -0.590816

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Phage endolysin N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28)
  • ⊞PFAM:
    SH3 (CL0010) SH3_5; Bacterial SH3 domain (PF08460; HMM-score: 34.8)
    and 1 more
    SH3_3; Bacterial SH3 domain (PF08239; HMM-score: 21.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • ⊞PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • ⊞DeepLocPro: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cell wall & surface Score: 0.0021
    • Extracellular Score: 0.9978
  • ⊞LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • ⊞SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.183786
    • TAT(Tat/SPI): 0.003498
    • LIPO(Sec/SPII): 0.01098
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MPAGYTLDKNNVPYKKETGYYTVANVKGNNVRDGYSTNSRITGVLPNNATIKYDGAYCINGYRWITYIANSGQRRYIATGEVDKAGNRISSFGKFSAV

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊞Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊞Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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