PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005022000
• symbol^?: —
• synonym:
• description^?: peptidoglycan hydrolase

  descriptions from strain specific annotations:

  • peptidoglycan hydrolase
  • amidase
  • truncated amidase
  • truncated phage amidase
  • amidase (fragment)
  • pseudogene
  • SH3 domain-containing protein
  • SH3 domain protein
  • SH3 type 3 domain-containing protein
  • Truncated amidase, phage associated
• strand^?: -
• coordinates^?: 5195189..5195485
• synteny block^?: BlockID0039030
• occurrence^?: in 45% of 33 strains

⊟Orthologs

COL:
—
N315:
—
NCTC8325:
SAOUHSC_02170
Newman:
NWMN_1878
USA300_FPR3757:
SAUSA300_1921
04-02981:
SA2981_1903 (lytA)
08BA02176:
—
11819-97:
—
6850:
RSAU_000618
71193:
—
ECT-R 2:
ECTR2_1816
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_18600
JH1:
SaurJH1_2036
JH9:
SaurJH9_2001
JKD6008:
SAA6008_01954
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR2037
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_02077
TCH60:
HMPREF0772_11196
TW20:
SATW20_19370
USA300_TCH1516:
USA300HOU_1948
VC40:
—

⊟Genome Viewer

NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  NCTC8325        MPAGYTLDKNNVPYKKETGYYTVANVKGNNVRDGYSTNSRITGVLPNNATIKYDGAYCIN
  Newman          MPAGYTLDKNNVPYKKETGYYTVANVKGNNVRDGYSTNSRITGVLPNNATIKYDGAYCIN
  USA300_FPR3757  MPAGYTLDKNNVPYKKETGYYTVANVKGNNVRDGYSTNSRITGVLPNNATIKYDGAYCIN
                  ************************************************************
  
  NCTC8325        GYRWITYIANSGQRRYIATGEVDKAGNRISSFGKFSAV
  Newman          GYRWITYIANSGQRRYIATGEVDKAGNRISSFGKFSAV
  USA300_FPR3757  GYRWITYIANSGQRRYIATGEVDKAGNRISSFGKFSAV
                  **************************************