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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1980 [new locus tag: NWMN_RS11455 ]
  • pan locus tag?: SAUPAN005347000
  • symbol: kdpC
  • pan gene symbol?: kdpC
  • synonym:
  • product: potassium-transporting ATPase subunit C

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_1980 [new locus tag: NWMN_RS11455 ]
  • symbol: kdpC
  • product: potassium-transporting ATPase subunit C
  • replicon: chromosome
  • strand: -
  • coordinates: 2197531..2198091
  • length: 561
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGAATACGATAAGAAATAGTATTTGTTTAACGATAATAACTATGGTATTATGTGGATTT
    TTATTCCCGTTAGCTATCACGTTAATTGGTCAAATATTTTTTTATCAACAAGCAAATGGC
    AGTTTAATTACGTATGACAATCGTATAGTTGGATCAAAATTGATTGGACAGCACTGGACA
    GAGACACGATATTTTCACGGGAGACCGAGTGCAGTTGATTATAATATGAATCCTGAAAAA
    TTATATAAAAACGGCGTATCTTCAGGTGGAAGTAATGAATCGAATGGAAACACCGAATTA
    ATAGCACGCATGAAACATCATGTTAAATTTGGGAATTCAAATGTAACAATAGATGCTGCA
    ACAAGTTCTGGGTCGGGCTTAGATCCGCATATTACGGTCGAAAATGCATTGAAGCAAGCA
    CCTCGTATTGCTGATGCTCGTCATGTATCTACTTCAAGAGTGGCCGACTTGATTCAACAT
    CGTAAGCAGCGTGGTGTGTTAACAAATGATTATGTGAATGTGCTTGAACTAAATATCGCT
    CTTGATAAGATGAAAGATTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    561

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_1980 [new locus tag: NWMN_RS11455 ]
  • symbol: KdpC
  • description: potassium-transporting ATPase subunit C
  • length: 186
  • theoretical pI: 9.40539
  • theoretical MW: 20618.4
  • GRAVY: -0.225806

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Cations and iron carrying compounds K+-transporting ATPase, C subunit (TIGR00681; EC 3.6.3.12; HMM-score: 166.8)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    no clan defined KdpC; K+-transporting ATPase, c chain (PF02669; HMM-score: 193.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 9.68
    • Cellwall Score: 0.17
    • Extracellular Score: 0.16
    • Internal Helix: 1
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0
    • N-terminally Anchored Score: 4
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.116219
    • TAT(Tat/SPI): 0.001725
    • LIPO(Sec/SPII): 0.033554
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNTIRNSICLTIITMVLCGFLFPLAITLIGQIFFYQQANGSLITYDNRIVGSKLIGQHWTETRYFHGRPSAVDYNMNPEKLYKNGVSSGGSNESNGNTELIARMKHHVKFGNSNVTIDAATSSGSGLDPHITVENALKQAPRIADARHVSTSRVADLIQHRKQRGVLTNDYVNVLELNIALDKMKD

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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