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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_2304 [new locus tag: NWMN_RS13245 ]
  • pan locus tag?: SAUPAN005936000
  • symbol: NWMN_2304
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_2304 [new locus tag: NWMN_RS13245 ]
  • symbol: NWMN_2304
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2532250..2532432
  • length: 183
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    ATGGTAGAACGTTATATCAAAGTTTTAATATTATATATTTTCACAACACTACTATCTTCT
    ATTTCAGTAACGTCAAAATGTGTACCTAATAAAGTTATAAGGTTTATTTTACGTACTGCA
    ATTGGTTACAGTGTATTTGCATATGGTTTACATTACTTTTCAAATTTAAAAAAGAATAAG
    TAA
    60
    120
    180
    183

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_2304 [new locus tag: NWMN_RS13245 ]
  • symbol: NWMN_2304
  • description: hypothetical protein
  • length: 60
  • theoretical pI: 10.5747
  • theoretical MW: 6962.35
  • GRAVY: 0.531667

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for N315, NCTC8325
  • PFAM:
    no clan defined Myco_arth_vir_N; Mycoplasma virulence signal region (Myco_arth_vir_N) (PF09610; HMM-score: 9.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 2
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: Signal peptide LIPO(Sec/SPII) length 26 aa
    • SP(Sec/SPI): 0.330076
    • TAT(Tat/SPI): 0.002463
    • LIPO(Sec/SPII): 0.473076
    • Cleavage Site: CS pos: 26-27. TSK-CV. Pr: 0.3587
  • predicted transmembrane helices (TMHMM): 2

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MVERYIKVLILYIFTTLLSSISVTSKCVPNKVIRFILRTAIGYSVFAYGLHYFSNLKKNK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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