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NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_2407 [new locus tag: NWMN_RS13840 ]
- pan locus tag?: SAUPAN006139000
- symbol: NWMN_2407
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_2407 [new locus tag: NWMN_RS13840 ]
- symbol: NWMN_2407
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2648604..2650496
- length: 1893
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5331481 NCBI
- RefSeq: YP_001333441 NCBI
- BioCyc:
- MicrobesOnline: 3708009 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1861TTGACATCACTCATAAAAATCAATCGACTTAACTTAGACTTTTATAAAGGTGTAAGACAG
GGACTGTTAATGATTATTCCTGCAATAATCGGTTACTTATGTGGTAATTTCCAATTTGGA
TTATTAGTTGCAACCGGAACACTAGCCCATATTTATGTTTTTAAAGGTCCGTCGCGATCT
AAGCTGCGAACTGTAATAATTTGTAATTTAGCGTTTGCAATATGTATGATGCTTGGTACG
CTAACAGCCAAAACGCCACTCGTTTTTGGAATGACATTATTAATTGTTACGGTTATACCA
TTTTATATATTTACTGCCTTAAAAATAGCTGGACCGTCATCGACATTCTTCATTGTGACA
TTCAGTCTACCCATTAACTTACCTATAGCTCCCGAAGAAGCATTATATAGAGGCTTTGCG
ATTTTAGTAGGCGGTATACTTGCCACTATGATGGTGTTAATCACGATCGTATTTTCTAAA
AACAAAGCTGAAGAACAAGCAATTCAAAATGATTTTAAACTCATATCTAAGTTGTTACAC
ACTTATAATGATAAATCTGCTTTTTTACAAGTAGCAAAAACAGCGGTGGATAGTTTTAAA
GCATCTGATAAATTATTAATCACTTCTACTTCAAGTAACGATAAATTAAGTAGACGTTTC
CAAAAATTATTATTATTACACACATCTGCCCAAGGGATTTATTCTGAACTGTTAGAGTTG
AACGCTAAACAAATTCGACCATTGCCAGATGAGTTAATTGAAATGATGGATCATATCATT
GCACAACTAGATAATAGTGAGGAAAATGTAAGATATTGGCGAAAAGAAGTGACAGTAACA
GAGGAATTTCAAAATTTATTCAACCATATATTGAAAATTGATGAAATGGTGCATGCAAAT
GAAGCGCGTATTGCGTATGAAGCAGACATGCGAAAACCTTTATATAGTAAACGCATTTAT
CAAAATTTAACATTAGACTCTATTGTTTTTAGAAATACATTGAGATATACAGCGATTATG
ATGATAGCGATATTTATTGCGTTAATGTTTGATTTTGAAAAAGCATACTGGATACCGTTA
TCTGCACATACAATATTACTAGGAACATCAACTATACATGCAATCGAGAGAGGTATGGCA
CGAGGTTTAGGTACTATTTTAGGTGTGTTAGTACTTTCAGTCATATTGTTGTTTTCAATA
CCAACACCTGTTGCAGTAATTTTAATGGGCATTGCAGCATTGTTTACTGAAGCATTGGTG
GGAGCAAATTATGCGATTGCAGTAGTTTTTATTACAATACAAGTTATTTTAATGAACGGA
TTAGCATCACAGAATTTAACAATTAACATTGCGTTTCCAAGAGTTATTGACGTTGCAATG
GGTATTGTGATTGCAATCATAGGTTTATTTGTCCTTGGACAACGTACCGCATCCGCATTG
CTTCCTAATGTAATGGCTGAAGTTGTTCGTAAAGAAGCAACGCTCTTTCATTATTTATTT
TCTGAAAATCAATATAAAGATGATGTGTATCAGAAAAACACGGCTATGAACCTATCTGTG
AAATTAAATAACATGACGCAAGTTTATAATGCAGCTAATGGTGAATTATTTAGTGATAAG
ACATTGATTCAAAATTATTATCCTAGCTTATTCGCATTAGAAGAAATTAGCTTTATGTTA
AATAGAGCCATGGCTAATGAAGATAGACTTACAATAAATGAACAATTAATGGGCGAGTAT
TTAGCAATATTTGAAAACATCGCTAAGCATTTCGAATTAAATACAGAATTAGAAATAAAG
ATATTACCAGATTTACCACAGTATAATTATATTCAATCAGCAATGATGAATATTCAACAC
AATGGTTTTCGTGAGAGAGACAAGAACGTTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_2407 [new locus tag: NWMN_RS13840 ]
- symbol: NWMN_2407
- description: hypothetical protein
- length: 630
- theoretical pI: 8.0645
- theoretical MW: 70876.1
- GRAVY: 0.390159
⊟Function[edit | edit source]
- TIGRFAM: integral membrane protein, YccS/YhfK family (TIGR01667; HMM-score: 76.3)Cell envelope Other TIGR01666 family membrane protein (TIGR01666; HMM-score: 64.4)
- TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
- PFAM: FUSC (CL0307) FUSC_2; Fusaric acid resistance protein-like (PF13515; HMM-score: 61.5)and 2 moreFUSC; Fusaric acid resistance protein family (PF04632; HMM-score: 33.4)FUSC-like; FUSC-like inner membrane protein yccS (PF12805; HMM-score: 5.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 10
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.015496
- TAT(Tat/SPI): 0.002267
- LIPO(Sec/SPII): 0.008926
- predicted transmembrane helices (TMHMM): 9
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MTSLIKINRLNLDFYKGVRQGLLMIIPAIIGYLCGNFQFGLLVATGTLAHIYVFKGPSRSKLRTVIICNLAFAICMMLGTLTAKTPLVFGMTLLIVTVIPFYIFTALKIAGPSSTFFIVTFSLPINLPIAPEEALYRGFAILVGGILATMMVLITIVFSKNKAEEQAIQNDFKLISKLLHTYNDKSAFLQVAKTAVDSFKASDKLLITSTSSNDKLSRRFQKLLLLHTSAQGIYSELLELNAKQIRPLPDELIEMMDHIIAQLDNSEENVRYWRKEVTVTEEFQNLFNHILKIDEMVHANEARIAYEADMRKPLYSKRIYQNLTLDSIVFRNTLRYTAIMMIAIFIALMFDFEKAYWIPLSAHTILLGTSTIHAIERGMARGLGTILGVLVLSVILLFSIPTPVAVILMGIAALFTEALVGANYAIAVVFITIQVILMNGLASQNLTINIAFPRVIDVAMGIVIAIIGLFVLGQRTASALLPNVMAEVVRKEATLFHYLFSENQYKDDVYQKNTAMNLSVKLNNMTQVYNAANGELFSDKTLIQNYYPSLFALEEISFMLNRAMANEDRLTINEQLMGEYLAIFENIAKHFELNTELEIKILPDLPQYNYIQSAMMNIQHNGFRERDKNV
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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