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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA2299 [new locus tag: SA_RS13180 ]
- pan locus tag?: SAUPAN006139000
- symbol: SA2299
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA2299 [new locus tag: SA_RS13180 ]
- symbol: SA2299
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2581766..2583589
- length: 1824
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 1125226 NCBI
- RefSeq: NP_375623 NCBI
- BioCyc: see SA_RS13180
- MicrobesOnline: 104649 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1801ATGATTATTCCTGCAATAATCGGTTACTTATGTGGTAATTTCCAATTTGGATTATTAGTT
GCAACCGGAACACTAGCCCATATTTATGTTTTTAAAGGTCCGTCGCGATCTAAGCTGCGA
ACTGTAATAATTTGTAATTTAGCGTTTGCAATATGTATGATGCTTGGTACGCTAACAGCC
AAAACGCCACTCGTTTTTGGAATGACATTATTAATTGTTACGGTTATACCATTTTATATA
TTTACTGCCTTAAAAATAGCTGGACCGTCATCGACATTCTTCATTGTGACATTCAGTCTA
CCCATTAACTTACCTATAGCTCCCGAAGAAGCATTATATAGAGGCTTTGCGATTTTAGTA
GGCGGTATACTTGCCACTATGATGGTGTTAATCACGATCGTATTTTCTAAAAACAAAGCT
GAAGAACAAGCAATTCAAAATGATTTTAAACTCATATCTAAGTTGTTACACACTTATAAT
GATAAAGCTGCTTTTTTACAAGTAGCAAAAACAGCGGTGGATAGTTTTAAAGCATCTGAT
AAATTATTAATCACTTCTACTTCAAGTAACGATAAATTAAGTAGACGTTTCCAAAAATTA
TTATTATTACACACATCTGCCCAAGGGATTTATTCTGAACTGTTAGAGTTGAACGCTAAA
CAAATTCGACCATTGCCAGATGAGTTAATTGAAATGATGGATCATATCATTGCACAACTA
GATAATAGTGATGAAAATGTAAGATATTGGCGAAAAGAAGTGACAGTAACAGAGGAATTT
CAAAATTTATTCAACCATATATTGAAAATTGATGAAATGGTGCATGCAAATGAAGCGCGT
ATTGCGTATGAAGCAGACATGCGAAAACCTTTATATAGTAAACGCATTTATCAAAATTTA
ACATTAGACTCTATTGTTTTTAGAAATACATTGAGATATACAGCGATTATGATGATAGCG
ATATTTATTGCGTTAATGTTTGATTTTGAAAAAGCATACTGGATACCGTTATCTGCACAT
ACAATATTACTAGGAACATCAACTATACATGCAATCGAGAGAGGTATGGCACGAGGTTTA
GGTACTATTTTAGGTGTGTTAGTACTTTCAGTCATATTGTTGTTTTCAATACCAACACCT
GTTGCAGTAATTTTAATGGGCATTGCAGCATTGTTTACTGAAGCATTGGTGGGAGCAAAT
TATGCGATTGCAGTAGTTTTTATTACAATACAAGTTATTTTAATGAATGGATTAGCATCA
CAGAATTTAACAATTAACATTGCGTTTCCAAGAGTTATTGACGTTGCAATAGGTATTGTG
ATTGCAATCATAGGTTTATTTGTCCTTGGACAACGTACCGCATCCGTATTGCTTCCTAAT
GTAATGGCTGAAGTTGTTCGTAAAGAAGCAACGCTCTTCCATTATTTGTTTTCTGAAAAC
CAATATAAAGATAATGTGTATCAGAAAAACACGGCCATGAACCTATCTGTGAAATTAAAT
AACATGACGCAAGTTTATAATGCAGCTAATGGTGAATTATTTAGTGATAAGACATTGATT
CAAAATTATTATCCTAGCTTATTCGCATTAGAAGAAATTAGCTTTATGTTAAATAGAGCC
ATGGCTAATGAAGATAGACTTACAATAAATGAACAATTAATGGGCGAGTATTTAGCAACA
TTTGAAAACATCGCTAAGCATTTAGAATTAAATACAGAATTAGAAATAAAGATATTACCA
GATTTACCACAGTATAATTATATTCAATCAGCAATGATGAATATTCAACACAATGGTTTT
CGTGAGAGAGACAAGAACGTTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA2299 [new locus tag: SA_RS13180 ]
- symbol: SA2299
- description: hypothetical protein
- length: 607
- theoretical pI: 7.37503
- theoretical MW: 68133.8
- GRAVY: 0.406425
⊟Function[edit | edit source]
- TIGRFAM: integral membrane protein, YccS/YhfK family (TIGR01667; HMM-score: 79.1)and 1 moreCell envelope Other TIGR01666 family membrane protein (TIGR01666; HMM-score: 62.8)
- TheSEED :
- Uncharacterized membrane protein YvaC
- PFAM: FUSC (CL0307) FUSC_2; Fusaric acid resistance protein-like (PF13515; HMM-score: 63.5)and 1 moreFUSC; Fusaric acid resistance protein family (PF04632; HMM-score: 36)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 10
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.017377
- TAT(Tat/SPI): 0.000728
- LIPO(Sec/SPII): 0.02095
- predicted transmembrane helices (TMHMM): 9
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MIIPAIIGYLCGNFQFGLLVATGTLAHIYVFKGPSRSKLRTVIICNLAFAICMMLGTLTAKTPLVFGMTLLIVTVIPFYIFTALKIAGPSSTFFIVTFSLPINLPIAPEEALYRGFAILVGGILATMMVLITIVFSKNKAEEQAIQNDFKLISKLLHTYNDKAAFLQVAKTAVDSFKASDKLLITSTSSNDKLSRRFQKLLLLHTSAQGIYSELLELNAKQIRPLPDELIEMMDHIIAQLDNSDENVRYWRKEVTVTEEFQNLFNHILKIDEMVHANEARIAYEADMRKPLYSKRIYQNLTLDSIVFRNTLRYTAIMMIAIFIALMFDFEKAYWIPLSAHTILLGTSTIHAIERGMARGLGTILGVLVLSVILLFSIPTPVAVILMGIAALFTEALVGANYAIAVVFITIQVILMNGLASQNLTINIAFPRVIDVAIGIVIAIIGLFVLGQRTASVLLPNVMAEVVRKEATLFHYLFSENQYKDNVYQKNTAMNLSVKLNNMTQVYNAANGELFSDKTLIQNYYPSLFALEEISFMLNRAMANEDRLTINEQLMGEYLATFENIAKHLELNTELEIKILPDLPQYNYIQSAMMNIQHNGFRERDKNV
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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