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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_2408 [new locus tag: NWMN_RS13845 ]
  • pan locus tag?: SAUPAN006141000
  • symbol: NWMN_2408
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_2408 [new locus tag: NWMN_RS13845 ]
  • symbol: NWMN_2408
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2650905..2652182
  • length: 1278
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGAAGGAAAAACGAACTAACGTAAGGTGGATGTTCGCGCTTGCGTTCTTCTTTATTGGG
    GTTATTGCGTATATGGATAGAGCAAACATTTCATATATCGCTAAGCAAATGATGGATGAT
    TTAGGGATGACAAAACCACAATTTGGTTTATTGGCATCATTCTTCTCTCTAGGTTATGCA
    TTAATGCAAGTACCATCGGGGATGTTGGCTGAAAAATTCGGTCCACGTAAGATGATTACA
    ATTGCATTAGTTTGGTGGAGTGCATTTACAATCTTAACGGGTATGATTAAGAACCACGGT
    TTAATTTATTTAGTGAGATTCTTATTTGGTGTAGGTGAGGCGCCAATGTACCCTTCTAAT
    GCTGTGTTTAATTCATTTTGGTTCTCTAAAAATGAAAAAGGTAGAGCATCAAGTGCATTA
    TTAGCAGGATCATATTTCGGACCTGTATTAGCACCAATAGTTACAATTGCTATTGTTAAC
    GCATTTAACTGGCAAGCAGTATTTTACATTTTTGGTGCAGTAGGTATTTTAATGGCTGTA
    TTATGGGCGATTATTGCCAAAGACTTACCTGAGCAACATAGAATGGTTAATGAAGCGGAG
    AAACGTTTCATTATGGAAAATCGTGATATCGTAGCTACTGAAAAGTCATCACCACCATGG
    AATGATTTCTTTAAACGTTTTAGCTTCTATGCAATTGCAATTCAATACTTTGTTGTACAA
    TTTATCATTACATTATTCTTAATTTGGTTACCGACGTATTTAACAGAAGTATTCCACGTT
    AACTTTAAAGAAATGAGCATTAGTTCATTACCTTGGTTATTAATGTTCTTCTTAATCTTA
    TCAGCAGGTGCAATTTCTGACCGTGTATTAGGATTAGGTCGTTCAAAATTCGTAGCTAGA
    GGTGTAATTGCAATTGCAGGATTTATTGTGTTTGCAGTTTCAATTATCTTTGCTGTACGC
    ACAGGAAATTTATATGTAAGTATTTTCTGGTTATCACTAGGTCTTGGTGGTATCGGTATT
    TCAATGGGTATGAGTTGGGCTGCAGCAACTGACTTAGGACGTAACTTCTCTGGTACAGTA
    TCAGGGTGGATGAACTTATGGGGTAATATAGGTGCATTAATCAGTCCGCTATTAGCAGGT
    CTATTCGTAGAACATTTGGGTTGGACAATGACATTCCAATTGTTAATCGTTCCAGCAGTA
    ATCGCTGTGATTATGTGGTTCTATGTGAAACCAGATCAACCTTTAATTGTTAGTGATGAT
    AAAGCAATAGAAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1278

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_2408 [new locus tag: NWMN_RS13845 ]
  • symbol: NWMN_2408
  • description: hypothetical protein
  • length: 425
  • theoretical pI: 10.0181
  • theoretical MW: 47626.3
  • GRAVY: 0.676706

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids D-galactonate transporter (TIGR00893; HMM-score: 236.9)
    and 19 more
    Metabolism Transport and binding proteins Anions Na(+)-dependent inorganic phosphate cotransporter (TIGR00894; HMM-score: 169.5)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids phosphoglycerate transporter family protein (TIGR00881; HMM-score: 134.1)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids MFS transporter, aromatic acid:H+ symporter (AAHS) family (TIGR00895; HMM-score: 90.9)
    Metabolism Transport and binding proteins Other glycerol-3-phosphate transporter (TIGR00712; HMM-score: 72.8)
    4-hydroxyphenylacetate permease (TIGR02332; HMM-score: 64.3)
    Metabolism Transport and binding proteins Anions nitrite transporter (TIGR00886; HMM-score: 54.6)
    multidrug resistance protein (TIGR00880; HMM-score: 50.6)
    drug resistance transporter, Bcr/CflA subfamily (TIGR00710; HMM-score: 47.7)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids oxalate/formate antiporter family transporter (TIGR00890; HMM-score: 40.2)
    Cellular processes Cellular processes Toxin production and resistance drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family (TIGR00711; HMM-score: 37.9)
    Metabolism Transport and binding proteins Other drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family (TIGR00711; HMM-score: 37.9)
    Metabolism Transport and binding proteins Amino acids, peptides and amines amino acid/peptide transporter (Peptide:H+ symporter) (TIGR00924; HMM-score: 33.8)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids MFS transporter, sialate:H+ symporter (SHS) family (TIGR00891; HMM-score: 30.7)
    Metabolism Transport and binding proteins Cations and iron carrying compounds cation transport protein (TIGR00898; HMM-score: 28.8)
    synaptic vesicle protein SV2 (TIGR01299; HMM-score: 24.9)
    Metabolism Transport and binding proteins Cations and iron carrying compounds H+ Antiporter protein (TIGR00900; HMM-score: 20.7)
    Metabolism Transport and binding proteins Anions phosphate:H+ symporter (TIGR00887; HMM-score: 16.3)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids polyol permease (TIGR00897; HMM-score: 15.7)
    Metabolism Transport and binding proteins Other cyanate transporter (TIGR00896; HMM-score: 13.1)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    MFS (CL0015) MFS_1; Major Facilitator Superfamily (PF07690; HMM-score: 220.4)
    and 2 more
    Sugar_tr; Sugar (and other) transporter (PF00083; HMM-score: 14.8)
    MFS_4; Uncharacterised MFS-type transporter YbfB (PF06779; HMM-score: 12.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0
    • Signal peptide possibility: 0
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.103938
    • TAT(Tat/SPI): 0.001043
    • LIPO(Sec/SPII): 0.021064
  • predicted transmembrane helices (TMHMM): 11

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKEKRTNVRWMFALAFFFIGVIAYMDRANISYIAKQMMDDLGMTKPQFGLLASFFSLGYALMQVPSGMLAEKFGPRKMITIALVWWSAFTILTGMIKNHGLIYLVRFLFGVGEAPMYPSNAVFNSFWFSKNEKGRASSALLAGSYFGPVLAPIVTIAIVNAFNWQAVFYIFGAVGILMAVLWAIIAKDLPEQHRMVNEAEKRFIMENRDIVATEKSSPPWNDFFKRFSFYAIAIQYFVVQFIITLFLIWLPTYLTEVFHVNFKEMSISSLPWLLMFFLILSAGAISDRVLGLGRSKFVARGVIAIAGFIVFAVSIIFAVRTGNLYVSIFWLSLGLGGIGISMGMSWAAATDLGRNFSGTVSGWMNLWGNIGALISPLLAGLFVEHLGWTMTFQLLIVPAVIAVIMWFYVKPDQPLIVSDDKAIEK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: CcpA regulon
    CcpA(TF)important in Carbon catabolism; RegPrecise 

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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