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NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_2537 [new locus tag: NWMN_RS14580 ]
- pan locus tag?: SAUPAN006369000
- symbol: isaB
- pan gene symbol?: isaB
- synonym:
- product: immunodominant antigen B
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_2537 [new locus tag: NWMN_RS14580 ]
- symbol: isaB
- product: immunodominant antigen B
- replicon: chromosome
- strand: -
- coordinates: 2792220..2792747
- length: 528
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5331771 NCBI
- RefSeq: YP_001333571 NCBI
- BioCyc:
- MicrobesOnline: 3708139 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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481ATGAATAAAACCAGTAAAGTTTGTGTAGCAGCAACATTAGCATTGGGCACACTGATTGGA
GTAACAGTTGTTGAAAATTCGGCGCCAACAAGTAAACAGGCACAGGCAGCAATAACCCCA
TATTATACTTATAATGGTTATATTGGTAATAATGCTAATTTTATTCTGGATAAGAATTTT
ATTAACGCGATTAAGTATGATAATGTGAAATTCAATGGTATTAAATTAGCTAAAACGAAT
ACGATAAAAAAAGTAGAGAAATATGATCAAACTTTTAAAGGTGTTTCTGCAAAAGGAAAC
GAAGCAAGTCAATTGCAATTTGTAGTTAAAAATAATATTTCATTAAAAGATATCCAAAAA
GCTTATGGCAAGGACTTGAAAAAAGAAAATGGTAAAACAAAGGAAGCTGATAGCGGTATT
TTTTACTATCAAAATGCTAAAAAGACATTAGGCATCTGGTTTGTCGTTGATCATAATAGA
GTTGTCGAAGTAACAGTTGGACATACACCATACAAAACAAGTAAATAA60
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528
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_2537 [new locus tag: NWMN_RS14580 ]
- symbol: IsaB
- description: immunodominant antigen B
- length: 175
- theoretical pI: 10.2294
- theoretical MW: 19370
- GRAVY: -0.410857
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
- PFAM:
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Extracellular
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0
- Extracellular Score: 10
- Internal Helices: 0
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: 1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: Signal peptide SP(Sec/SPI) length 36 aa
- SP(Sec/SPI): 0.982133
- TAT(Tat/SPI): 0.005618
- LIPO(Sec/SPII): 0.008531
- Cleavage Site: CS pos: 36-37. AQA-AI. Pr: 0.8629
- predicted transmembrane helices (TMHMM): 2
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNKTSKVCVAATLALGTLIGVTVVENSAPTSKQAQAAITPYYTYNGYIGNNANFILDKNFINAIKYDNVKFNGIKLAKTNTIKKVEKYDQTFKGVSAKGNEASQLQFVVKNNISLKDIQKAYGKDLKKENGKTKEADSGIFYYQNAKKTLGIWFVVDHNRVVEVTVGHTPYKTSK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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