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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS01325 [old locus tag: NWMN_0239 ]
  • pan locus tag?: SAUPAN001214000
  • symbol: NWMN_RS01325
  • pan gene symbol?: —
  • synonym:
  • product: TIGR01741 family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS01325 [old locus tag: NWMN_0239 ]
  • symbol: NWMN_RS01325
  • product: TIGR01741 family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 296039..296539
  • length: 501
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (296039..296539) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_0239

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGACTTTCGAAGAGAAACTAAGTCAAATGTACAATAAAATTGCAAGTGAGATCAGTGGA
    ATGATACCAGTAGAATGGGAGCAAGTATTTACAATAGCTTATGTAACTGATCAAGCTGGG
    GAAGTCATTTTTAATTATACTAAACCAGGTAGTGATGAATTAAATTATTATTCAGACATA
    CCTAAAGATTGCAATGTCTCAAAAGATATTTTTAAGAATTCATGGTTTAAAGTTTATCGA
    ATGTTTGATGAGTTAAGAGAAACTTTTAAAGAAGAAGAGCTTGAACCATGGACATCATGC
    GAATTTGACTTTACAAGAGATGGCAAATTGAATGTATCTTTTGATTATATTGATTGGGTG
    AATTCAGAATTTGGACCAATGGGAAGAGAACATTATTATATGTATAAAAAATTTGGAATT
    TGGCCTGAAAAAGAATATGCCATAAATTGGGTTGAAAAAATAAAAGATTATGTTAAAGAG
    CAAGATGAAGCTGAACTATAG
    60
    120
    180
    240
    300
    360
    420
    480
    501

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS01325 [old locus tag: NWMN_0239 ]
  • symbol: NWMN_RS01325
  • description: TIGR01741 family protein
  • length: 166
  • theoretical pI: 4.19689
  • theoretical MW: 20015.3
  • GRAVY: -0.68494

⊟Function[edit | edit source]

  • TIGRFAM:
    conserved hypothetical protein (TIGR01741; HMM-score: 255.1)
  • TheSEED: data available for COL, N315
  • PFAM:
    no clan defined DUF600; Protein of unknown function, DUF600 (PF04634; HMM-score: 163.4)
    and 2 more
    Holin-II (CL0563) Phage_holin_2_2; Phage holin T7 family, holin superfamily II (PF10746; HMM-score: 13.8)
    no clan defined DUF1031; Protein of unknown function (DUF1031) (PF06275; HMM-score: 13.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008852
    • TAT(Tat/SPI): 0.000555
    • LIPO(Sec/SPII): 0.000768
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTFEEKLSQMYNKIASEISGMIPVEWEQVFTIAYVTDQAGEVIFNYTKPGSDELNYYSDIPKDCNVSKDIFKNSWFKVYRMFDELRETFKEEELEPWTSCEFDFTRDGKLNVSFDYIDWVNSEFGPMGREHYYMYKKFGIWPEKEYAINWVEKIKDYVKEQDEAEL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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