From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS01955 [old locus tag: NWMN_0345 ]
  • pan locus tag?: SAUPAN001896000
  • symbol: NWMN_RS01955
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS01955 [old locus tag: NWMN_0345 ]
  • symbol: NWMN_RS01955
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 393932..395065
  • length: 1134
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (393932..395065) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_0345

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGGTTAATGCATTAACACCAAAACATTTAGCTGAAAAGCGTGCAGGATTCCATGAGTTG
    TTCTTTGATTTAATTTTCGTCTATGCCATTCAAAAAATTGCACATGTGATTTTAACAACA
    CAAAACGGTTCCATTTCAGCTGATTTATTTTTCAAATACATCGTCATGAGTTTGTTCTTA
    TGGTTAATGTGGTCTCATCAAACATTTTTTACAAATCGATTTGGTCAAGTTACATTCAAA
    GACGTCTCGTTTATGATGTTTAATATGTTCATCATGGTCTTCCTATCTAACAGCCTATAT
    CCGGACTTTGAAAAGACATTCTTCCCATTCTTCTTATGCGTGGCAATTATGTATTTAAGT
    ATCGGATTACAGTATTTATTACATATACGTACAGGGTTAGATTATGGCGATAAGCGTACA
    TGTCAAGCTTTTGCGAGCGTAGCCTTTGTGATTTCATTTTTATCATTTCTATCATTAGTA
    CTACCACAAAGTATCCATTACATCCCTGGATTTTTAGGCGTATTCATTGCAGCGACAGGA
    CTTATTCCATTTCAGAAATATCTTGTATTATCACCTGTTAATATGATGCATTTAGTAGAA
    CTTTTTTCGTTACTAACAATTATTATCTTTGGCGAGGTACTGGTTGGTTTAGCTTCGTCA
    TCATTTAGCATTGATCATTTTAGTTACATTTATATATTCCAATTTATGATTTTAATTAGT
    CTTTTCGGTGTATATTGGATCATTACTGAAAATTATATTAATCATAAATTAACATCTATC
    GGTTTCCGTTTATCGTATACGCATCTATTAATCAATATCGCTTTAGGTGTGATTAATGCT
    GCAATTGTTTTTAGTAATAACAATAAACTAAATGACTTGTTTGAAATTAATATGATGTAT
    ATCAGTGTTTTAATATTCTATATTGGATTATGGTTAATCACGCCTTATTTCCATAATGAA
    CTGACAAACGCGAAGTATATTTCATATTCACTAGGTATACTCGTTATGTCTTATATTGTC
    AGCCTTTTATTTAAAGGTCACGACCATGTAATGATTATCTCAGTATCAGTTGCAACCTTC
    TGCATCATGCTGATTTATTTTAAAAATCAACGTCTACGTAATAAACATGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1134


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS01955 [old locus tag: NWMN_0345 ]
  • symbol: NWMN_RS01955
  • description: hypothetical protein
  • length: 377
  • theoretical pI: 8.65681
  • theoretical MW: 43616.6
  • GRAVY: 0.793899

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see NWMN_0345
  • PFAM:
    no clan defined LtrA; Bacterial low temperature requirement A protein (LtrA) (PF06772; HMM-score: 177.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 12
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9991
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0008
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001483
    • TAT(Tat/SPI): 0.000126
    • LIPO(Sec/SPII): 0.003805
  • predicted transmembrane helices (TMHMM): 11

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MVNALTPKHLAEKRAGFHELFFDLIFVYAIQKIAHVILTTQNGSISADLFFKYIVMSLFLWLMWSHQTFFTNRFGQVTFKDVSFMMFNMFIMVFLSNSLYPDFEKTFFPFFLCVAIMYLSIGLQYLLHIRTGLDYGDKRTCQAFASVAFVISFLSFLSLVLPQSIHYIPGFLGVFIAATGLIPFQKYLVLSPVNMMHLVELFSLLTIIIFGEVLVGLASSSFSIDHFSYIYIFQFMILISLFGVYWIITENYINHKLTSIGFRLSYTHLLINIALGVINAAIVFSNNNKLNDLFEINMMYISVLIFYIGLWLITPYFHNELTNAKYISYSLGILVMSYIVSLLFKGHDHVMIISVSVATFCIMLIYFKNQRLRNKHE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=NWMN_RS01955&oldid=122330"