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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS02310 [old locus tag: NWMN_0409 ]
  • pan locus tag?: SAUPAN002140000
  • symbol: NWMN_RS02310
  • pan gene symbol?: lpl6
  • synonym:
  • product: tandem-type lipoprotein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS02310 [old locus tag: NWMN_0409 ]
  • symbol: NWMN_RS02310
  • product: tandem-type lipoprotein
  • replicon: chromosome
  • strand: +
  • coordinates: 458182..458958
  • length: 777
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (458182..458958) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_0409

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGAAGTGTTTTCAGAAATTATACATATTTATATTAATTTTAATCGTATTAATGGCAGGA
    TGCGAAAGTAATAAGATCACTGGAGATTCGAAAGAAACACAGATCAAAAAGAGCTTTGCG
    AAAACATTAGATGTATACCCTACGAAAAATCTAGAAGATTTTTATGACAAAGAAGGATAT
    CGAGATGGCGAATTTAAAAAGGGTGACAAAGGGAAGTGGGTTATTAGATCTGAAATGACA
    ACAGAACTGAAAAATGAAAATATGGTATCTAAAGGTATGGTCATACGTTTAAATAGAAAT
    AGTAGAACATGCACTGGTGAATATTTTGTCAGGATAGTTAAAGAAGACAGTGAGGGCAAG
    GTATATAGTGATGAACGAAAATATCCAGTGAAAATGGAAAATAATAAAATCATTACATTA
    AAACCAATCGATGATGAAAAAGTAAAAAAAGAAATTGAAGAATTTAAATTCTTCGTACAA
    TACGGGAATTTCAAAGAATTGGAAAACTATAAAGACGGAGAAGTGACATATAACCCAGAA
    GCACCAATATACTCTGCACAATATCAATTGAAAAATAGTGATTATAATGTAGAACAACTA
    CGTAAGCGATATAATATAACGACGAAAAAAGCGCCTAAATTATTATTGAAGGGTTCAGGT
    AATTTAAAAGGCTCATCAGTTGGATATAAAAATATTGAATTTACCTTTGTTGAAAATAAG
    GAAGAAAATATTTACTTCACAGATAGTATTAATTTCAACCCAAGTGAGGATAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    777


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS02310 [old locus tag: NWMN_0409 ]
  • symbol: NWMN_RS02310
  • description: tandem-type lipoprotein
  • length: 258
  • theoretical pI: 9.04362
  • theoretical MW: 30215.3
  • GRAVY: -0.806589

⊟Function[edit | edit source]

  • TIGRFAM:
    Staphylococcus tandem lipoproteins (TIGR01742; HMM-score: 349)
  • TheSEED: see NWMN_0409
  • PFAM:
    LolA_LolB (CL0048) DUF576; Csa1 family (PF04507; HMM-score: 364.2)
    and 1 more
    OB (CL0021) tRNA_anti-like; tRNA_anti-like (PF12869; HMM-score: 15.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.001
    • Cytoplasmic Membrane Score: 0.7518
    • Cell wall & surface Score: 0.0032
    • Extracellular Score: 0.2439
  • LocateP:
  • SignalP: Signal peptide LIPO(Sec/SPII) length 20 aa
    • SP(Sec/SPI): 0.000424
    • TAT(Tat/SPI): 0.000033
    • LIPO(Sec/SPII): 0.99943
    • Cleavage Site: CS pos: 20-21. MAG-CE. Pr: 0.9998
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKCFQKLYIFILILIVLMAGCESNKITGDSKETQIKKSFAKTLDVYPTKNLEDFYDKEGYRDGEFKKGDKGKWVIRSEMTTELKNENMVSKGMVIRLNRNSRTCTGEYFVRIVKEDSEGKVYSDERKYPVKMENNKIITLKPIDDEKVKKEIEEFKFFVQYGNFKELENYKDGEVTYNPEAPIYSAQYQLKNSDYNVEQLRKRYNITTKKAPKLLLKGSGNLKGSSVGYKNIEFTFVENKEENIYFTDSINFNPSEDK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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