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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

organism: Staphylococcus aureus Newman
locus tag: NWMN_RS07725 [old locus tag: NWMN_1372 ]
pan locus tag^?: SAUPAN003921000
symbol: NWMN_RS07725
pan gene symbol^?: —
synonym:
product: membrane protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

type: CDS
locus tag: NWMN_RS07725 [old locus tag: NWMN_1372 ]
symbol: NWMN_RS07725
product: membrane protein
replicon: chromosome
strand: -
coordinates: 1538440..1539027
length: 588
essential: unknown other strains

⊟Accession numbers[edit | edit source]

Location: NC_009641 (1538440..1539027) NCBI
BioCyc:
MicrobesOnline: see NWMN_1372

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

1
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541
ATGACAATTAAAGCATTTTGGCAATATACACTTTATCAACGTTCTTGGTTAATGATGCTA
CTCATTTGTAATATATTAGGGATGATTTATGGTTATATATGGTATGGTGAACAATTAAGT
CATACGCCCTGGCATTTTAAGATTTTTGTTCCAGATAGCTCAACTGCAATATTATACTTA
GTTATTTCTATCTCATTGATATTAATTCAAAAACAAAATAGTATTATCGATGCACTGGCA
TTTGTAACATTATTCAAATATGGGATTTGGGCAGTTATAATGAATATATTATTTATTATT
GAACAAGGTGATATTACAGTAAATGGTTTGGTATTAATGTTTTCCCACAGTATAATGGCT
GTTCAGGCAATTTACTTCTATCCTAGGTTTAAACGTTCTATGATTGGAATCAGTGTAGCG
ATGATTTGGGTGTTTTTGAATGATTATATTGACTATTTTCACCTTCAATTTCCATATTAT
GATTTTATAACTACACATGTGTGGCAAATTGGTGTATTATCATGTTGTCTAAGTGTTTTT
GGACTTTTGCTTTATATTGAATTAAACAAATTATTAAAGTGTAAATGA
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588

⊟Protein[edit | edit source]

⊟General[edit | edit source]

locus tag: NWMN_RS07725 [old locus tag: NWMN_1372 ]
symbol: NWMN_RS07725
description: membrane protein
length: 195
theoretical pI: 8.28627
theoretical MW: 22953.4
GRAVY: 0.804615

⊟Function[edit | edit source]

TIGRFAM:
VPDSG-CTERM protein sorting domain (TIGR03778; HMM-score: 11.5)
TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
PFAM:
no clan defined DUF1405; Protein of unknown function (DUF1405) (PF07187; HMM-score: 166.3)

⊟Structure, modifications & cofactors[edit | edit source]

domains:
modifications:
cofactors:
effectors:

⊟Localization[edit | edit source]

PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 6
LocateP:
SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.004359
- TAT(Tat/SPI): 0.000213
- LIPO(Sec/SPII): 0.038065
predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

GI: 446074880 NCBI
RefSeq: WP_000152735 NCBI
UniProt: see NWMN_1372

⊟Protein sequence[edit | edit source]

MTIKAFWQYTLYQRSWLMMLLICNILGMIYGYIWYGEQLSHTPWHFKIFVPDSSTAILYLVISISLILIQKQNSIIDALAFVTLFKYGIWAVIMNILFIIEQGDITVNGLVLMFSHSIMAVQAIYFYPRFKRSMIGISVAMIWVFLNDYIDYFHLQFPYYDFITTHVWQIGVLSCCLSVFGLLLYIELNKLLKCK

⊟Experimental data[edit | edit source]

experimentally validated: data available for COL
protein localization:
quantitative data / protein copy number per cell:
interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

regulator: CodY see NWMN_1372

⊟Transcription pattern[edit | edit source]

S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

Aureolib: no data available

⊟Protein stability[edit | edit source]

half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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