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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS09435 [old locus tag: NWMN_1682 ]
- pan locus tag?: SAUPAN004505000
- symbol: NWMN_RS09435
- pan gene symbol?: tnp2
- synonym:
- product: IS200/IS605 family transposase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_RS09435 [old locus tag: NWMN_1682 ]
- symbol: NWMN_RS09435
- product: IS200/IS605 family transposase
- replicon: chromosome
- strand: -
- coordinates: 1877700..1878185
- length: 486
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481ATGTCATCTGACACAAACAGTTTAGCACATACAAAATGGAATTGTAAGTATCATATTGTC
TTTGCACCTAAATACAGAAGACAAGTGATATATGGAAAAATAAAAAAAGATATAGGGATT
ATATTGCGTCAATTATGTGAAAGAAAAGGTGTAGAGATAATTGAAGCAGAGGCATGTAAA
GATCATATCCATATGTTAGTTAGTATACCACCCAAACTTGGGGTATCATCATTTGTTGGC
TATTTAAAAGGAAAAAGTAGTTTAATGATATTTGATAGACATGCTAACTTAAAGTATAGA
TATGGAAATAGAAAGTTTTGGTGTAAAGGATTTTATGTGGATACAGTAGGTAGAAATAAA
AAAGTGATTGAAAATTATATTCGTAATCAATTACAAGAGGATATCGTTGCAGACCAAATC
TCAATGGAAGAATATTTAGATCCTTTCACTGGAGAGAAAAATAAAAAAAGAAAGAAAAAA
GAGTAA60
120
180
240
300
360
420
480
486
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_RS09435 [old locus tag: NWMN_1682 ]
- symbol: NWMN_RS09435
- description: IS200/IS605 family transposase
- length: 161
- theoretical pI: 10.1718
- theoretical MW: 18905.9
- GRAVY: -0.599379
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for COL, NCTC8325, USA300_FPR3757
- PFAM: HUH (CL0481) Y1_Tnp; Transposase IS200 like (PF01797; HMM-score: 129.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003054
- TAT(Tat/SPI): 0.00031
- LIPO(Sec/SPII): 0.001118
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MSSDTNSLAHTKWNCKYHIVFAPKYRRQVIYGKIKKDIGIILRQLCERKGVEIIEAEACKDHIHMLVSIPPKLGVSSFVGYLKGKSSLMIFDRHANLKYRYGNRKFWCKGFYVDTVGRNKKVIENYIRNQLQEDIVADQISMEEYLDPFTGEKNKKRKKKE
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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