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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS10925 [old locus tag: NWMN_1899 ]
- pan locus tag?: SAUPAN001376000
- symbol: NWMN_RS10925
- pan gene symbol?: —
- synonym:
- product: terminase
⊟Additional information (user-provided)[edit | edit source]
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_RS10925 [old locus tag: NWMN_1899 ]
- symbol: NWMN_RS10925
- product: terminase
- replicon: chromosome
- strand: -
- coordinates: 2112486..2114147
- length: 1662
- essential: unknown
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟DNA sequence[edit | edit source]
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1621ATGATTAGTAATAAATACGTTGATGAATATATAAATTTGTGGAAACAAGGAAAGATAATT
TTAAATAAAGAAAGAATTGATCTCTTTAATTATCTACAAAAACATATATATTCACGAGAT
GATGTATATTTTGATGAACAGAAAATCGAGGATTGTATCAAATTTATTGAAAAATGGTAT
TTTCCAACATTACCATTTCAAAGGTTTATCATAGCTAATATATTTCTTATAGATAAAAAT
ACAGATGAAGCTTTCTTTACAGAATTTGCTATTTTCATGGGACGTGGAGGCGGGAAAAAC
GGTCTAATAAGTGCTATTAGTGATTTTCTTTCTACGCCCTTACACGGAGTTAAAGAATAT
CACATCTCCATTGTTGCTAATAGTGAAGATCAAGCAAAAACATCGTTTGATGAAATCAGA
ACCGTTTTAATGGATAACAAACGAAATAAGACGGGTAAAACGCCAAAAGCTCCTTATGAA
GTTAGTAAAGCAAAAATAATAAACCGTGCAACTAAATCGGTTATTCGATATAACACATCA
AACACAAAAACCAAAGACGGTGGACGTGAGGGGTGTGTTATTTTTGATGAAATTCATTAT
TTCTTTGGTCCTGAAATGGTAAACGTCAAACGTGGTGGATTAGGTAAAAAGAAAAATAGA
AGAACGTTTTATATAAGTACTGATGGTTTTGTTAGAGAGGGTTATATCGATGCAATGAAG
CACAAAATTGCAAGTGTATTAAGTGGCAAGGTTAAAAATAGTAGATTGTTTGCTTTTTAT
TGTAAGTTAGACGATCCAAAAGAAGTTGATGACAGACAGACGTGGGAAAAGGCGAACCCA
ATGTTACATAAACCGTTATCAGAATACGCTAAAACACTGCTAAGTACGATTGAAGAAGAA
TATAACGATTTACCATTCAACCGTTCAAATAAGCCCGAATTCATGACTAAGCGAATGAAT
TTGCCTGAAGTTGACCTTGAAAAAGTAATAGCACCATGGAAAGAAATACTAGCGACTAAT
AGAGAGATACCAAATTTAGATAATCAAATGTGTATTGGTGGTTTAGACTTTGCAAACATT
CGAGATTTTGCAAGTGTAGGGCTATTATTCCGAAAAAACGATGATTACATTTGGTTAGGA
CATTCGTTTGTAAGACAAGGGTTTTTGGATGATGTCAAATTAGAACCTCCTATTAAAGAA
TGGGAAAAAATGGGATTATTGACCATTGTCGATGATGATGTCATTGAAATTGAATATATA
GTTGATTGGTTTTTAAAGGCTAGAGAAAAATATGGGCTTGAAAAAGTCATAGCTGATAAT
TATAGAACTGATATTGTAAGACGTGCGTTTGAGGATGCTGGCATAAAACTTGAAGTACTT
AGAAATCCAAAAGCAATACATGGATTACTTGCACCACGTATCGATACAATGTTTGCGAAA
CATAACGTAATATATGGAGACAATCCTTTGATGCGTTGGTTTACTAATAATGTTGCAGTA
AAGGTTAAACCCGATGGTAATAAAGAATATATTAAAAAAGATGAAAATAGAAGAAAAACC
GATGGGTTCATGGCTTTTGTTCACGCATTATATAGAGCAGACGATATAGTAGACAAAGAC
ATGTCTAAAGCGCTTGATGCATTAATGAGTATAGATTTCTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_RS10925 [old locus tag: NWMN_1899 ]
- symbol: NWMN_RS10925
- description: terminase
- length: 553
- theoretical pI: 8.46683
- theoretical MW: 64307.4
- GRAVY: -0.45859
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see NWMN_1899
- PFAM: P-loop_NTPase (CL0023) TerL_ATPase; Terminase large subunit, ATPase domain (PF03354; HMM-score: 60.6)RNase_H (CL0219) TerL_nuclease; Terminase large subunit, endonuclease domain (PF20441; HMM-score: 60.5)and 1 moreP-loop_NTPase (CL0023) ResIII; Type III restriction enzyme, res subunit (PF04851; HMM-score: 16.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9443
- Cytoplasmic Membrane Score: 0.0071
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.0486
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002105
- TAT(Tat/SPI): 0.000095
- LIPO(Sec/SPII): 0.000782
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟Protein sequence[edit | edit source]
- MISNKYVDEYINLWKQGKIILNKERIDLFNYLQKHIYSRDDVYFDEQKIEDCIKFIEKWYFPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVREGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKPLSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAREKYGLEKVIADNYRTDIVRRAFEDAGIKLEVLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLMRWFTNNVAVKVKPDGNKEYIKKDENRRKTDGFMAFVHALYRADDIVDKDMSKALDALMSIDF
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Additional information (user-provided)[edit | edit source]
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟Other information (user-provided)[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]