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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS10935 [old locus tag: NWMN_1901 ]
  • pan locus tag?: SAUPAN001379000
  • symbol: NWMN_RS10935
  • pan gene symbol?: —
  • synonym:
  • product: HNH endonuclease

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS10935 [old locus tag: NWMN_1901 ]
  • symbol: NWMN_RS10935
  • product: HNH endonuclease
  • replicon: chromosome
  • strand: -
  • coordinates: 2114618..2114917
  • length: 300
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (2114618..2114917) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1901

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    ATGATGACTAAAGACGAACGCATACGATTCTATAAGTCTAAAGAATGGCAAACAACAAGA
    AAAAGAGTGCTAGAAAGAGATAATTATGAATGTCAACAATGTAAGAGAGACGGCAAGTTA
    ACGACATATGACAAAAGCAAGCGTAAGTCGTTGGATGTAGATCATATATTATCGCTAGAA
    CATCATCCGGAGTTTGCTCATGACTTAAACAATTTAGAAACACTGTGTATTAAATGTCAC
    AACAAAAAAGAAAAGAGATTTATAAAAAAAGAAAATAAATGGAAAGACGAAAAATGGTAA
    60
    120
    180
    240
    300


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS10935 [old locus tag: NWMN_1901 ]
  • symbol: NWMN_RS10935
  • description: HNH endonuclease
  • length: 99
  • theoretical pI: 9.9015
  • theoretical MW: 12328.1
  • GRAVY: -1.49899

⊟Function[edit | edit source]

  • TIGRFAM:
    decaheme c-type cytochrome, DmsE family (TIGR03508; HMM-score: 15.2)
    and 1 more
    cxxc_20_cxxc protein (TIGR04104; HMM-score: 5.9)
  • TheSEED: see NWMN_1901
  • PFAM:
    His-Me_finger (CL0263) HNH; HNH endonuclease (PF01844; HMM-score: 40)
    and 6 more
    Multiheme_cytos (CL0317) Cytochrome_C7; Cytochrome c7 and related cytochrome c (PF14522; HMM-score: 15.5)
    Zn_Beta_Ribbon (CL0167) Zn_ribbon_ISL3; zinc-finger of transposase IS204/IS1001/IS1096/IS1165 (PF14690; HMM-score: 13.9)
    His-Me_finger (CL0263) HNH_5; HNH endonuclease (PF14279; HMM-score: 13.1)
    no clan defined Anti-TRAP; Tryptophan RNA-binding attenuator protein inhibitory protein (PF15777; HMM-score: 12.8)
    DUF7459; Domain of unknown function (DUF7459) (PF24258; HMM-score: 12.3)
    Tbcl_zf (CL0839) DUF7685; Domain of unknown function (DUF7685) (PF24734; HMM-score: 12.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8462
    • Cytoplasmic Membrane Score: 0.0249
    • Cell wall & surface Score: 0.0086
    • Extracellular Score: 0.1203
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009156
    • TAT(Tat/SPI): 0.00065
    • LIPO(Sec/SPII): 0.004319
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MMTKDERIRFYKSKEWQTTRKRVLERDNYECQQCKRDGKLTTYDKSKRKSLDVDHILSLEHHPEFAHDLNNLETLCIKCHNKKEKRFIKKENKWKDEKW

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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