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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS11060 [old locus tag: NWMN_1918 ]
  • pan locus tag?: SAUPAN005119000
  • symbol: NWMN_RS11060
  • pan gene symbol?: —
  • synonym:
  • product: oxidoreductase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS11060 [old locus tag: NWMN_1918 ]
  • symbol: NWMN_RS11060
  • product: oxidoreductase
  • replicon: chromosome
  • strand: -
  • coordinates: 2126419..2127171
  • length: 753
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (2126419..2127171) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1918

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGCAAGCATTACAAACAAAATCGAACATAGGCGAAATGTTCAACATACAAGAAAAAGAA
    AATGGAGAAATCGCAATCAGCGGTCGAGAACTTCATCAAGCATTAGAGGTTAAGACTCCA
    TACAAAAAATGGTTTGAAAGAATGAGTGATTACGGATTTGAAGAAAATATCGATTATATA
    GTCACGGACATTTTTGTCCATAACCCACTAGGAGGTCGTCAGAATCAAACTGACCACGCA
    CTCACACTAGACACTGCAAAAGAGATTGCAATGATTCAACGTAGTGAACCTGGCAAACGT
    GCAAGACAATACTTCATCCAAGTTGAAAAAGCATGGAATAGCCCAGAAATGATTATGCAA
    CGTGCTTTAAAAATTGCTAACAACACAATCAATCAATTAGAAACAAAGATTGAACGTGAT
    AAACCAAAAATTGTATTTGCAGATGCAGTAGCTACTACTAAGACATCAATTTTAGTTGGA
    GAGTTAGCAAAGATCATTAAACAAAACGGTATAAACATCGGGCAACGCAGATTGTTTGAG
    TGGTTACGTCAAAACGGATTCCTTATTAAACGCAAGGGTGTGGATTATAACATGCCTACA
    CAGTATTCAATGGAACGTGAGTTATTCGAAATTAAAGAAACATCAATCACACATTCGGAC
    GGTCACACATCAATTAGTAAGACGCCAAAAGTAACAGGCAAAGGACAACAATACTTTGTT
    AATAAGTTTTTAGGAGAAAAACAAACATCTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    753

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS11060 [old locus tag: NWMN_1918 ]
  • symbol: NWMN_RS11060
  • description: oxidoreductase
  • length: 250
  • theoretical pI: 9.75029
  • theoretical MW: 28802.7
  • GRAVY: -0.6464

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for N315, USA300_FPR3757
  • PFAM:
    no clan defined ANT; Phage antirepressor protein KilAC domain (PF03374; HMM-score: 113.9)
    and 2 more
    AntA; AntA/AntB antirepressor (PF08346; HMM-score: 89.2)
    DUF3134; Protein of unknown function (DUF3134) (PF11332; HMM-score: 12.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004996
    • TAT(Tat/SPI): 0.00047
    • LIPO(Sec/SPII): 0.00065
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MQALQTKSNIGEMFNIQEKENGEIAISGRELHQALEVKTPYKKWFERMSDYGFEENIDYIVTDIFVHNPLGGRQNQTDHALTLDTAKEIAMIQRSEPGKRARQYFIQVEKAWNSPEMIMQRALKIANNTINQLETKIERDKPKIVFADAVATTKTSILVGELAKIIKQNGINIGQRRLFEWLRQNGFLIKRKGVDYNMPTQYSMERELFEIKETSITHSDGHTSISKTPKVTGKGQQYFVNKFLGEKQTS

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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