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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS13440 [old locus tag: NWMN_2334 ]
- pan locus tag?: SAUPAN005983000
- symbol: NWMN_RS13440
- pan gene symbol?: —
- synonym:
- product: AraC family transcriptional regulator
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_RS13440 [old locus tag: NWMN_2334 ]
- symbol: NWMN_RS13440
- product: AraC family transcriptional regulator
- replicon: chromosome
- strand: -
- coordinates: 2564714..2565187
- length: 474
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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361
421ATGGAATATCAATTACAACAACTTGCGTCGTTAACGTTAGTAGGTATTAAAGAAACGTAT
GAAAATGGACGACAGGCTCAGCAACATATAGCAGGGTTTTGGCAAAGATGTTATCAAGAG
GGAGTAATTGCGGATTTACAGTTAAAAAATAATGGTGATTTAGCCGGGATACTTGGCTTA
TGTATACCTGAATTAGACGGTAAGATGTCATATATGATTGCAGTTACCGGAGATAATAGT
GCTGATATTGAAAAATATGATGTCATAACATTAGCAAGTTCAAAGTATATGGTATTTGAA
GCACAGGGCGCAGTACCTAAAGCAGTTCAACAAAAAATGGAAGAGGTTCATCACTACATA
CATCAATATCAAGCAGATACGGTAAAATCAGCACCATTTTTTGAGTTGTATCAGGATGGT
GATACTACAAGTGAAAAATATATTACAGAAATTTGGATGCCTGTTAAAGGGTGA60
120
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474
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_RS13440 [old locus tag: NWMN_2334 ]
- symbol: NWMN_RS13440
- description: AraC family transcriptional regulator
- length: 157
- theoretical pI: 4.53247
- theoretical MW: 17720
- GRAVY: -0.317834
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
- PFAM: SHS2 (CL0319) GyrI-like; GyrI-like small molecule binding domain (PF06445; HMM-score: 51.2)Cass2; Integron-associated effector binding protein (PF14526; HMM-score: 44.8)and 1 moreNADP_Rossmann (CL0063) NAS; Nicotianamine synthase protein (PF03059; HMM-score: 11.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.019187
- TAT(Tat/SPI): 0.000909
- LIPO(Sec/SPII): 0.001978
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MEYQLQQLASLTLVGIKETYENGRQAQQHIAGFWQRCYQEGVIADLQLKNNGDLAGILGLCIPELDGKMSYMIAVTGDNSADIEKYDVITLASSKYMVFEAQGAVPKAVQQKMEEVHHYIHQYQADTVKSAPFFELYQDGDTTSEKYITEIWMPVKG
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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