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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS13715 [old locus tag: NWMN_2381 ]
- pan locus tag?: SAUPAN006070000
- symbol: NWMN_RS13715
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_RS13715 [old locus tag: NWMN_2381 ]
- symbol: NWMN_RS13715
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2616136..2616462
- length: 327
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301ATGTTTACTACGTATAAAAATATTAATGAACTTGAAAATGCCTATGATGAAGAAAGAAAA
CAATTGAATGATGCATTCAATCAAATTGATGAATTAAGACATCAAACACGCAAGAAATGT
GAACAAATGTATGATCATTTCTTATATCTCAAACATAAAATGAATTATAGTGAAGACGCT
ATGATCAGGATGACACGTATTATAGAATCTTTCGATAGAGAAACGAATCAACGTATCCGA
CATCACGAAATGAAATTAGAAGATTATAAAGATGAGTTAAGAAGAGAATATCTAAAACAA
TCTGACAGAATTGAAGGAGATGAATAA60
120
180
240
300
327
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_RS13715 [old locus tag: NWMN_2381 ]
- symbol: NWMN_RS13715
- description: hypothetical protein
- length: 108
- theoretical pI: 5.63959
- theoretical MW: 13586.1
- GRAVY: -1.45
⊟Function[edit | edit source]
- TIGRFAM: two transmembrane protein (TIGR04527; HMM-score: 9.7)and 3 moreDNA metabolism Degradation of DNA exodeoxyribonuclease VII, large subunit (TIGR00237; EC 3.1.11.6; HMM-score: 7.2)Protein fate Protein folding and stabilization chaperone protein DnaK (TIGR02350; HMM-score: 6.9)variant surface antigen, rifin family (TIGR01477; HMM-score: 5.3)
- TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
- PFAM: VPS23_C (CL0596) Mod_r; Modifier of rudimentary (Mod(r)) protein (PF07200; HMM-score: 15.7)no clan defined Jnk-SapK_ap_N; JNK_SAPK-associated protein-1 (PF09744; HMM-score: 15.4)AATF-Che1; Apoptosis antagonizing transcription factor (PF13339; HMM-score: 13.6)Exonuc_VII_L; Exonuclease VII, large subunit (PF02601; HMM-score: 12.8)and 9 moreHUP (CL0039) CDPS; Cyclodipeptide synthase (PF16715; HMM-score: 11.9)no clan defined DUF1043; Protein of unknown function (DUF1043) (PF06295; HMM-score: 11.6)SWIRM-assoc_1; SWIRM-associated region 1 (PF16495; HMM-score: 11.6)Fib_alpha; Fibrinogen alpha/beta chain family (PF08702; HMM-score: 10.8)Spc24; Spc24 subunit of Ndc80 (PF08286; HMM-score: 10.7)DUF4407; Domain of unknown function (DUF4407) (PF14362; HMM-score: 10.2)V_ATPase_I; V-type ATPase 116kDa subunit family (PF01496; HMM-score: 7.7)FliD_C; Flagellar hook-associated protein 2 C-terminus (PF07195; HMM-score: 7.4)FapA; Flagellar Assembly Protein A (PF03961; HMM-score: 6.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.004856
- TAT(Tat/SPI): 0.000517
- LIPO(Sec/SPII): 0.001212
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MFTTYKNINELENAYDEERKQLNDAFNQIDELRHQTRKKCEQMYDHFLYLKHKMNYSEDAMIRMTRIIESFDRETNQRIRHHEMKLEDYKDELRREYLKQSDRIEGDE
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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