From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS14160 [old locus tag: NWMN_2465 ]
  • pan locus tag?: SAUPAN006229000
  • symbol: NWMN_RS14160
  • pan gene symbol?: crtO
  • synonym:
  • product: glycosyl-4,4'-diaponeurosporenoate acyltransferase

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS14160 [old locus tag: NWMN_2465 ]
  • symbol: NWMN_RS14160
  • product: glycosyl-4,4'-diaponeurosporenoate acyltransferase
  • replicon: chromosome
  • strand: -
  • coordinates: 2713289..2713777
  • length: 489
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (2713289..2713777) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_2465

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    ATGAAAAAATATATTAAAACAGCATTTTTTTGTAGTATGTATTGGTTAATTGTTCAACTA
    AATATAGCAAATTTAGGTACAAGAATTCCTGATAAGTATTTTCGTCAGAAGTACATAATA
    TTTAAATCATTTAACTTTGAGAAGCATGGAAAATTTTGGAACAAATGGTTTTACGTAAGA
    AAATGGAAACATAAGATTTTAGATGGTCATCAGCTTAATCAAAATATATATGATCAGCGT
    CATTTAATGACAATCAATACTGATGAAATTGAAAAAATGATTATAGAGACAAAGAGGGCA
    GAGTTGATTCATTGGATATCGATACTTCCAGTCATCATATTCAATAAAGGCCCTCGTTTA
    GTAAAGTATATAAATATTTTCTATGCAATGATAGCTAATGTTCCAATCATTATTGTGCAA
    CGCTATAATCGACCGAGATTAACGCAGTTACTACGCATATTAAAACGAAAAGGTGAACGT
    CATGACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    489


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_RS14160 [old locus tag: NWMN_2465 ]
  • symbol: NWMN_RS14160
  • description: glycosyl-4,4'-diaponeurosporenoate acyltransferase
  • length: 162
  • theoretical pI: 10.8199
  • theoretical MW: 19930.6
  • GRAVY: -0.284568

⊟Function[edit | edit source]

  • reaction:
    EC 2.3.1.-?  ExPASy
  • TIGRFAM:
  • TheSEED: see NWMN_2465
  • PFAM:
    no clan defined CrtO; Glycosyl-4,4'-diaponeurosporenoate acyltransferase (PF18927; HMM-score: 84.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0013
    • Cytoplasmic Membrane Score: 0.9979
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0008
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.224674
    • TAT(Tat/SPI): 0.001771
    • LIPO(Sec/SPII): 0.081329
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKKYIKTAFFCSMYWLIVQLNIANLGTRIPDKYFRQKYIIFKSFNFEKHGKFWNKWFYVRKWKHKILDGHQLNQNIYDQRHLMTINTDEIEKMIIETKRAELIHWISILPVIIFNKGPRLVKYINIFYAMIANVPIIIVQRYNRPRLTQLLRILKRKGERHD

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=NWMN_RS14160&oldid=124717"