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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0037 [new locus tag: SA_RS00330 ]
  • pan locus tag?: SAUPAN000100000
  • symbol: SA0037
  • pan gene symbol?: maoC
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0037 [new locus tag: SA_RS00330 ]
  • symbol: SA0037
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 44557..44985
  • length: 429
  • essential: no DEG

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGAAATACGATGATTTTATAGTAGGAGAAACATTCAAAACAAAAAGCCTTCATATTACA
    GAAGAAGAAATTATCCAATTTGCAACAACTTTTGATCCTCAATATATGCATATAGATAAA
    GAAAAAGCAGAACAAAGTAGATTTAAAGGTATCATTGCATCTGGCATGCATACACTTTCA
    ATATCATTTAAATTATGGGTAGAAGAAGGTAAATACGGAGAAGAAGTTGTAGCAGGAACA
    CAAATGAATAACGTTAAATTTATTAAACCTGTATACCCAGGTAATACATTGTACGTTATC
    GCTGAAATTACAAATAAGAAATCCATAAAAAAAGAAAATGGACTCGTTACAGTGTCACTT
    TCAACATACAATGAAAATGAAGAAATTGTATTTAAGGGAGAAGTAACAGCACTTATTAAT
    AATTCATAA
    60
    120
    180
    240
    300
    360
    420
    429


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0037 [new locus tag: SA_RS00330 ]
  • symbol: SA0037
  • description: hypothetical protein
  • length: 142
  • theoretical pI: 5.2803
  • theoretical MW: 16136.3
  • GRAVY: -0.311268

⊟Function[edit | edit source]

  • TIGRFAM:
    phenylacetic acid degradation protein paaN (TIGR02278; HMM-score: 60.4)
    and 1 more
    Metabolism Fatty acid and phospholipid metabolism Biosynthesis beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ (TIGR01750; EC 4.2.1.-; HMM-score: 17.9)
  • TheSEED  :
    • MaoC domain protein
  • PFAM:
    HotDog (CL0050) MaoC_dehydratas; MaoC like domain (PF01575; HMM-score: 119.6)
    and 5 more
    FAS1_DH_region; FAS1-like, dehydratase domain region (PF13452; HMM-score: 32.8)
    MC_hydratase; Mesaconyl-CoA hydratase (PF19315; HMM-score: 16.1)
    4HBT; Thioesterase superfamily (PF03061; HMM-score: 15.7)
    FabA; FabA-like domain (PF07977; HMM-score: 15.7)
    OB (CL0021) OB_YrrC; ATP-dependent DNA helicase YrrC, OB-fold domain (PF23139; HMM-score: 15)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9342
    • Cytoplasmic Membrane Score: 0.0501
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0158
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002744
    • TAT(Tat/SPI): 0.000287
    • LIPO(Sec/SPII): 0.00032
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKYDDFIVGETFKTKSLHITEEEIIQFATTFDPQYMHIDKEKAEQSRFKGIIASGMHTLSISFKLWVEEGKYGEEVVAGTQMNNVKFIKPVYPGNTLYVIAEITNKKSIKKENGLVTVSLSTYNENEEIVFKGEVTALINNS

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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