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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA0046 [new locus tag: SA_RS00375 ]
- pan locus tag?: SAUPAN000112000
- symbol: SA0046
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA0046 [new locus tag: SA_RS00375 ]
- symbol: SA0046
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 53823..54467
- length: 645
- essential: no DEG
⊟Accession numbers[edit | edit source]
- Gene ID: 1122820 NCBI
- RefSeq: NP_373286 NCBI
- BioCyc: see SA_RS00375
- MicrobesOnline: 102312 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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601ATGGATATAGCAAATATGACTATTATGTTGCTAATTGGCGTACTGGGTGGATTTATATCT
GGATTAATAGGTATTGGGGGCGCAATTATTATTTACCCAGCTATTCTTATATTGCCACCA
TTAATAGGTATACCTGCGTATAGTGCATATATTGCTTCGGGACTTACCTCTAGTCAAGTA
TTTTTCAGTACACTTAGTGGATCATTAAATGCAAGAAAACAACCAGCTTTCTCTCCTAAA
CTTGTTATATATATGGGAGGGGGTATGTTGATTGGAAGCATGTTAGGGGCAATTTTAGCT
AGTTTGTTTAATGCTACTTTTGTAAATACGGTATATGTAATAATCGCCATACTTGCTTTA
ATATTGATGTTTATTAAAGTTAAACCTACTACACAAGAGACGAAATCTAAACCTTTGCTA
TTTATTATAGTTGGATTTGGAATTGGTGTAATTTCGGGAATTGTGGGTGCAGGTGGAGCA
TTTATCATCATTCCTGTATTATTAGCATTATTTAAATTACCAATGAATACGGTAGTGAAC
AATAGCATAGCAATTGCTTTTATATCTTCAGTAGGGGCATTTTTTATAAAATTAATGCAA
GGATATATACCAGTAGAAAGTGCAATTTTTTTGATAATTGAATGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA0046 [new locus tag: SA_RS00375 ]
- symbol: SA0046
- description: hypothetical protein
- length: 214
- theoretical pI: 10.0492
- theoretical MW: 22359.1
- GRAVY: 1.33084
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- UPF0721 transmembrane protein YrkJ
- PFAM: LysE (CL0292) TauE; Sulfite exporter TauE/SafE (PF01925; HMM-score: 110.6)and 3 moreno clan defined DUF3278; Protein of unknown function (DUF3278) (PF11683; HMM-score: 9.9)DUF3488; Domain of unknown function (DUF3488) (PF11992; HMM-score: 9.8)SAYSvFN; Uncharacterized conserved domain (SAYSvFN) (PF10260; HMM-score: 6.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 6
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.030371
- TAT(Tat/SPI): 0.004179
- LIPO(Sec/SPII): 0.017423
- predicted transmembrane helices (TMHMM): 6
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MDIANMTIMLLIGVLGGFISGLIGIGGAIIIYPAILILPPLIGIPAYSAYIASGLTSSQVFFSTLSGSLNARKQPAFSPKLVIYMGGGMLIGSMLGAILASLFNATFVNTVYVIIAILALILMFIKVKPTTQETKSKPLLFIIVGFGIGVISGIVGAGGAFIIIPVLLALFKLPMNTVVNNSIAIAFISSVGAFFIKLMQGYIPVESAIFLIIE
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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