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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA0050 [new locus tag: SA_RS00395 ]
- pan locus tag?: SAUPAN000061000
- symbol: tnpC
- pan gene symbol?: tnpC1
- synonym:
- product: transposase for Tn554
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA0050 [new locus tag: SA_RS00395 ]
- symbol: tnpC
- product: transposase for Tn554
- replicon: chromosome
- strand: -
- coordinates: 57792..58169
- length: 378
- essential: no DEG
⊟Accession numbers[edit | edit source]
- Gene ID: 1122824 NCBI
- RefSeq: NP_373290 NCBI
- BioCyc: see SA_RS00395
- MicrobesOnline: 102316 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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361ATGGATAAACAAGTTAGAAATACAACAGAAATTGTACGTTTGGCGAAGCAGAAATCAAAA
AAGACAAGGGAAAAAGTAGACAAAGCGATTTCTAAATTTTCGATTGAAGGTAAAGTTATT
AATTTTAATTCAATAGCAAAGGAAGCTAATGTTTCTAAATCATGGCTTTATAAGGAACAC
GATATTAGGCAAAGAATCGAATCCCTTCGTGAGCGTCAAATAACAGCAAATGTAGTCTCA
AAACCCAAGAAAAGTTCTCGTTCGGAGGAAATCCTTATTAAAACCTTAAAAAGAAGAGTA
ATGGAATTAGAAAAAGAAAATAAAAAATTACAGAACCAAATTCAAAAATTATATGGAGAT
CTGTATAATAAAGAATAA60
120
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378
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA0050 [new locus tag: SA_RS00395 ]
- symbol: TnpC
- description: transposase for Tn554
- length: 125
- theoretical pI: 10.822
- theoretical MW: 14804.1
- GRAVY: -1.0384
⊟Function[edit | edit source]
- TIGRFAM: DNA 3'-phosphatase (TIGR01664; EC 3.1.3.32; HMM-score: 11.3)
- TheSEED :
- Mobile element protein
- ⊞PFAM: CoA-acyltrans (CL0149) Transferase; Transferase family (PF02458; HMM-score: 18.4)no clan defined HALZ; Homeobox associated leucine zipper (PF02183; HMM-score: 17.9)bZIP (CL0018) bZIP_2; Basic region leucine zipper (PF07716; HMM-score: 15.9)HTH (CL0123) LacI; Bacterial regulatory proteins, lacI family (PF00356; HMM-score: 15.8)and 8 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MDKQVRNTTEIVRLAKQKSKKTREKVDKAISKFSIEGKVINFNSIAKEANVSKSWLYKEHDIRQRIESLRERQITANVVSKPKKSSRSEEILIKTLKRRVMELEKENKKLQNQIQKLYGDLYNKE
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊞Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊞Other Information[edit | edit source]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
⊟Relevant publications[edit | edit source]
T Ito, Y Katayama, K Hiramatsu
Cloning and nucleotide sequence determination of the entire mec DNA of pre-methicillin-resistant Staphylococcus aureus N315.
Antimicrob Agents Chemother: 1999, 43(6);1449-58
[PubMed:10348769] [WorldCat.org] [DOI] (P p)