PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA0071
• pan locus tag^?: SAUPAN000458000
• symbol: kdpC
• pan gene symbol^?: kdpC
• synonym:
• product: hypothetical protein

⊟Additional information (user-provided)

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA0071
• symbol: kdpC
• product: hypothetical protein
• replicon: chromosome
• strand: +
• coordinates: 80880..81251
• length: 372
• essential: no DEG

⊟Accession numbers

• Gene ID: 1122844 NCBI
• RefSeq: NP_373311 NCBI
• BioCyc:
• MicrobesOnline: 102337 MicrobesOnline

⊟Phenotype

⊟Additional information (user-provided)

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  361
  
  CTGATTATGTTTGTTTTATGCGGATTTATCTTCCCGCTGACTGTCACAGCGCTTGGACAA
  GTATTATTTCCAGAACAAGCAAACGGCAGTTTAGTGAAACAAGATGGCAAAGTAATTGGT
  TCAAAGCTCATTGGACAACAATGGACAGAACCTAAATATTTCCATGGACGTATCAGTGCA
  GTCAATTACAATATGAATGCGAATGAAGTGAAAGAAAGTGGCGGACCTGCTTCAGGCGGC
  TCAAACTACGGCAATTCAAATCCTGAATTGAAAAAAAGAGTTCAAGAGACTATTAAACAA
  GAAGGAAAAAAAATTTCAAGTGATGCGGTGACCGCTTCTGGCTCTGGTTTAGACCCAGAT
  ATTACGGTTTGA
  60
  120
  180
  240
  300
  360
  372
  

⊟Protein

⊟General

• locus tag: SA0071
• symbol: KdpC
• description: hypothetical protein
• length: 123
• theoretical pI: 8.46093
• theoretical MW: 13133.8
• GRAVY: -0.263415

⊟Function

• TIGRFAM:
  Metabolism Transport and binding proteins Cations and iron carrying compounds K+-transporting ATPase, C subunit (TIGR00681; EC 3.6.3.12; HMM-score: 125.6)
• TheSEED  :
  • Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)
  Potassium metabolism Potassium metabolism - no subcategory Potassium homeostasis  Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)
• PFAM:
  no clan defined KdpC; K+-transporting ATPase, c chain (PF02669; HMM-score: 148.1)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 0.17
  • Cytoplasmic Membrane Score: 9.51
  • Cellwall Score: 0.16
  • Extracellular Score: 0.15
  • Internal Helix: 1
• DeepLocPro: Extracellular
  • Cytoplasmic Score: 0.0466
  • Cytoplasmic Membrane Score: 0.1429
  • Cell wall & surface Score: 0.0016
  • Extracellular Score: 0.8089
• LocateP: Secretory(released) (with CS)
  • Prediction by SwissProt Classification: Extracellular
  • Pathway Prediction: Sec-(SPI)
  • Intracellular possibility: 0.17
  • Signal peptide possibility: 0.5
  • N-terminally Anchored Score: -1
  • Predicted Cleavage Site: VLFPEQAN
• SignalP: Signal peptide SP(Sec/SPI) length 29 aa
  • SP(Sec/SPI): 0.826667
  • TAT(Tat/SPI): 0.009981
  • LIPO(Sec/SPII): 0.038102
  • Cleavage Site: CS pos: 29-30. ANG-SL. Pr: 0.5537
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 15925778 NCBI
• RefSeq: NP_373311 NCBI
• UniProt: A0A0H3JK46 UniProt

⊟Additional information (user-provided)

⊟Protein sequence

• MIMFVLCGFIFPLTVTALGQVLFPEQANGSLVKQDGKVIGSKLIGQQWTEPKYFHGRISAVNYNMNANEVKESGGPASGGSNYGNSNPELKKRVQETIKQEGKKISSDAVTASGSGLDPDITV

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: kdpA > kdpB > kdpC

⊟Regulation

• regulator:

⊟Additional information (user-provided)

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Additional information (user-provided)

⊟Other information (user-provided)

You can add further information about the gene and protein here. [edit]

⊟Literature

⊟References

⊟Relevant publications