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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0095 [new locus tag: SA_RS00635 ]
  • pan locus tag?: SAUPAN000862000
  • symbol: SA0095
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0095 [new locus tag: SA_RS00635 ]
  • symbol: SA0095
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 106345..107115
  • length: 771
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    GTGATGAAACGTTTAAATAAATTAGTGTTAGGTATTAGTTTCTTATTTTTAGTCATTAGT
    ATTACTGCTGGTTGTGGCATGGGTAAAGAAGCGGAAATTAAGAAAAGTTTTGAAAAGACA
    ATGAGTATGTATCCGATTAAAAACCTAGAGGATTTATATGACAAAGAGGGCTATCGAGAT
    GATCAATTTGATAAAAATGATAAGGGAACATGGATTGTAAATTCTCAAATGGCAATTCAA
    AATAAAGGAGAACCTATGAAATCAAAAGGCATGGTTCTGTATATGAATAGAAATACAAGA
    ACAACAAATGGCTATTATTATGTTAATGTGATTAAGGGCGAGGATAAAGGTAAACATCAA
    GACAATGAAAAAAGATACCCTGTTAAAATGGTCGACAATAAAATAATCCTTACTAAAGAA
    ATTAAAGATGAAAACATAAAAATAGAAATCGAAAACTTTAAGTTTTTTGTTCAATATGGA
    AACTTTAAAGATTTGGAAAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCA
    AGTTATTCAGCTAAATATCAATTAACTAATGATGATTACAATGTAAAGCAATTACGTAAA
    AGATATGACATACCAACAAATAAAGCACCGAAGTTGTTGTTGAAGGGTACAGGGAATTTA
    AAAGGTTCATCAGTTGGATATAAAGACATTGAATTTACGTTTGTAGAGAAAAAAGAAGAG
    AACATTTACTTTAGTGATGGGTTAATTTTTAAACCAAGTGAGGATAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    771

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0095 [new locus tag: SA_RS00635 ]
  • symbol: SA0095
  • description: hypothetical protein
  • length: 256
  • theoretical pI: 9.39998
  • theoretical MW: 29831
  • GRAVY: -0.790234

⊟Function[edit | edit source]

  • TIGRFAM:
    Staphylococcus tandem lipoproteins (TIGR01742; HMM-score: 383.3)
  • TheSEED  :
    • FIG01107885: hypothetical protein
  • PFAM:
    LolA_LolB (CL0048) DUF576; Csa1 family (PF04507; HMM-score: 418.8)
    and 1 more
    no clan defined DUF3519; Protein of unknown function (DUF3519) (PF12033; HMM-score: 10.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 9.87
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helix: 1
  • LocateP: Lipid anchored
    • Prediction by SwissProt Classification: Extracellular
    • Pathway Prediction: Sec-(SPII)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: ITAGCGM
  • SignalP: Signal peptide LIPO(Sec/SPII) length 24 aa
    • SP(Sec/SPI): 0.001025
    • TAT(Tat/SPI): 0.000085
    • LIPO(Sec/SPII): 0.998677
    • Cleavage Site: CS pos: 24-25. TAG-CG. Pr: 0.9992
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MMKRLNKLVLGISFLFLVISITAGCGMGKEAEIKKSFEKTMSMYPIKNLEDLYDKEGYRDDQFDKNDKGTWIVNSQMAIQNKGEPMKSKGMVLYMNRNTRTTNGYYYVNVIKGEDKGKHQDNEKRYPVKMVDNKIILTKEIKDENIKIEIENFKFFVQYGNFKDLENYKDGDISYNPEVPSYSAKYQLTNDDYNVKQLRKRYDIPTNKAPKLLLKGTGNLKGSSVGYKDIEFTFVEKKEENIYFSDGLIFKPSEDK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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