From AureoWiki
Jump to navigation Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

Summary[edit | edit source]

  • pan ID?: SAUPAN000862000
  • symbol?:
  • synonym:
  • description?: tandem-type lipoprotein

      descriptions from strain specific annotations:

    • tandem-type lipoprotein
    • staphylococcal tandem lipoprotein
    • tandem lipoprotein
    • putative lipoprotein
    • staphylococcus tandem lipoproteins family protein
  • strand?: +
  • coordinates?: 1128997..1132094
  • synteny block?: BlockID0004230
  • occurrence?: in 56% of 34 strains

csa1C : tandem conserved staphylococcal antigen 1C [1]

• binds extracellular DNA as a lipoprotein during biofilm formation

• exact number of tandem repeats varies and can expand or contract over the course of an infection

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0099
    08BA02176:
    11819-97:
    MS7_0090
    6850:
    RSAU_000053
    71193:
    ECT-R 2:
    ECTR2_56
    ED133:
    ED98:
    SAAV_0067
    HO 5096 0412:
    JH1:
    SaurJH1_0090
    JH9:
    SaurJH9_0087
    JKD6008:
    JKD6159:
    JSNZ:
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    SAMSHR1132_00750
    MSSA476:
    SAS0074
    Mu3:
    SAHV_0098
    Mu50:
    SAV0099
    MW2:
    MW0073
    RF122:
    ST398:
    T0131:
    TCH60:
    TW20:
    USA300_TCH1516:
    USA300HOU_0111
    VC40:
    SAVC_00240

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MMT---------------------------------------------------------
    N315            MMKRLNKLVLGISFLFLVISITAGCGMGKEAEIKKSFEKTMSMYPIKNLEDLYDKEGYRD
    NCTC8325        MMKRLNKLVLGIIFLFLVISITAGCGIGKEAKIKKSFEKTLSMYPIKNLEDLYDKEGYRD
    Newman          MMKRLNKLVLGIIFLFLVISITAGCGIGKEAKIKKSFEKTLSMYPIKNLEDLYDKEGYRD
    USA300_FPR3757  MMKRLNKLVLGIIFLFLVISITAGCGIGKEAKIKKSFEKTLSMYPIKNLEDLYDKEGYRD
                    **.                                                         

    COL             -KFDKNDKGTWIIGSEMATQNKGEALKVKGMVLYMNRNTKTTKGYYYVNAIKNDKDGRPQ
    N315            DQFDKNDKGTWIVNSQMAIQNKGEPMKSKGMVLYMNRNTRTTNGYYYVNVIKGEDKGKHQ
    NCTC8325        DEFDKNDKGTWIIGSEMATQNKGEALKVKGMVLYMNRNTKTTKGYYYVNAIKNDKDGRPQ
    Newman          DEFDKNDKGTWIIGSEMATQNKGEALKVKGMVLYMNRNTKTTKGYYYVNAIKNDKDGRPQ
    USA300_FPR3757  DEFDKNDKGTWIIGSEMATQNKGEALKVKGMVLYMNRNTKTTKGYYYVNAIKNDKDGRPQ
                     :**********:.*:** *****.:* ***********:**:******.**.:..*: *

    COL             ENEKRYPVKMVDNKIIPTKEIKDKNIKKEIENFKFFVQYGNFKDLSKYKDGDISYNPEVP
    N315            DNEKRYPVKMVDNKIILTKEIKDENIKIEIENFKFFVQYGNFKDLENYKDGDISYNPEVP
    NCTC8325        ENEKRYPVKMVDNKIIPTKEIKDKNIKKEIENFKFFVQYGNFKDLSKYKDGDISYNPEVP
    Newman          ENEKRYPVKMVDNKIIPTKEIKDKNIKKEIENFKFFVQYGNFKDLSKYKDGDISYNPEVP
    USA300_FPR3757  ENEKRYPVKMVDNKIIPTKEIKDKNIKKEIENFKFFVQYGNFKDLSKYKDGDISYNPEVP
                    :*************** ******:*** *****************.:*************

    COL             SYSAKYQLTNDDYNVKQLRKRYDIPTNKAPKLLLKGTGNLKGSSVGYKDIEFTFVEKKEE
    N315            SYSAKYQLTNDDYNVKQLRKRYDIPTNKAPKLLLKGTGNLKGSSVGYKDIEFTFVEKKEE
    NCTC8325        SYSAKYQLTNDDYNVKQLRKRYDIPTNKAPKLLLKGTGNLKGSSVGYKDIEFTFVEKKEE
    Newman          SYSAKYQLTNDDYNVKQLRKRYDIPTNKAPKLLLKGTGNLKGSSVGYKDIEFTFVEKKEE
    USA300_FPR3757  SYSAKYQLTNDDYNVKQLRKRYDIPTNKAPKLLLKGTGNLKGSSVGYKDIEFTFVEKKEE
                    ************************************************************

    COL             NIYFSDGLIFKPSEDK
    N315            NIYFSDGLIFKPSEDK
    NCTC8325        NIYFSDGLIFKPSEDK
    Newman          NIYFSDGLIFKPSEDK
    USA300_FPR3757  NIYFSDGLIFKPSEDK
                    ****************

  1. Darya Belikova, Angelika Jochim, Jeffrey Power, Matthew T G Holden, Simon Heilbronner
    "Gene accordions" cause genotypic and phenotypic heterogeneity in clonal populations of Staphylococcus aureus.
    Nat Commun: 2020, 11(1);3526
    [PubMed:32665571] [WorldCat.org] [DOI] (I e)
    Christina Schluepen, Enrico Malito, Ambra Marongiu, Markus Schirle, Elisabeth McWhinnie, Paola Lo Surdo, Marco Biancucci, Fabiana Falugi, Vincenzo Nardi-Dei, Sara Marchi, Maria Rita Fontana, Benedetta Lombardi, Maria Grazia De Falco, C Daniela Rinaudo, Glen Spraggon, Mikkel Nissum, Fabio Bagnoli, Guido Grandi, Matthew J Bottomley, Sabrina Liberatori
    Mining the bacterial unknown proteome: identification and characterization of a novel family of highly conserved protective antigens in Staphylococcus aureus.
    Biochem J: 2013, 455(3);273-84
    [PubMed:23895222] [WorldCat.org] [DOI] (I p)
    Jeffrey S Kavanaugh, Caralyn E Flack, Jessica Lister, Erica B Ricker, Carolyn B Ibberson, Christian Jenul, Derek E Moormeier, Elizabeth A Delmain, Kenneth W Bayles, Alexander R Horswill
    Identification of Extracellular DNA-Binding Proteins in the Biofilm Matrix.
    mBio: 2019, 10(3);
    [PubMed:31239382] [WorldCat.org] [DOI] (I e)