Pangenome04-0298108BA0217611819-97685071193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000862000
• symbol^?: —
• description^?: tandem-type lipoprotein

  descriptions from strain specific annotations:

  • tandem-type lipoprotein
  • tandem lipoprotein
  • staphylococcal tandem lipoprotein
  • putative lipoprotein
  • staphylococcus tandem lipoproteins family protein
• strand^?: +
• coordinates^?: 1128997..1132094
• synteny block^?: BlockID0004230
• occurrence^?: in 58% of 33 strains

⊟Orthologs

COL:
SACOL0082
N315:
SA0095
NCTC8325:
SAOUHSC_00054
Newman:
NWMN_0044
USA300_FPR3757:
SAUSA300_0102
04-02981:
SA2981_0099
08BA02176:
—
11819-97:
MS7_0090
6850:
RSAU_000053
71193:
—
ECT-R 2:
ECTR2_56
ED133:
—
ED98:
SAAV_0067
HO 5096 0412:
—
JH1:
SaurJH1_0090
JH9:
SaurJH9_0087
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
SAMSHR1132_00750
MSSA476:
SAS0074
Mu3:
SAHV_0098
Mu50:
SAV0099
MW2:
MW0073
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0111
VC40:
SAVC_00240

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MMT---------------------------------------------------------
  N315            MMKRLNKLVLGISFLFLVISITAGCGMGKEAEIKKSFEKTMSMYPIKNLEDLYDKEGYRD
  NCTC8325        MMKRLNKLVLGIIFLFLVISITAGCGIGKEAKIKKSFEKTLSMYPIKNLEDLYDKEGYRD
  Newman          MMKRLNKLVLGIIFLFLVISITAGCGIGKEAKIKKSFEKTLSMYPIKNLEDLYDKEGYRD
  USA300_FPR3757  MMKRLNKLVLGIIFLFLVISITAGCGIGKEAKIKKSFEKTLSMYPIKNLEDLYDKEGYRD
                  **.                                                         
  
  COL             -KFDKNDKGTWIIGSEMATQNKGEALKVKGMVLYMNRNTKTTKGYYYVNAIKNDKDGRPQ
  N315            DQFDKNDKGTWIVNSQMAIQNKGEPMKSKGMVLYMNRNTRTTNGYYYVNVIKGEDKGKHQ
  NCTC8325        DEFDKNDKGTWIIGSEMATQNKGEALKVKGMVLYMNRNTKTTKGYYYVNAIKNDKDGRPQ
  Newman          DEFDKNDKGTWIIGSEMATQNKGEALKVKGMVLYMNRNTKTTKGYYYVNAIKNDKDGRPQ
  USA300_FPR3757  DEFDKNDKGTWIIGSEMATQNKGEALKVKGMVLYMNRNTKTTKGYYYVNAIKNDKDGRPQ
                   :**********:.*:** *****.:* ***********:**:******.**.:..*: *
  
  COL             ENEKRYPVKMVDNKIIPTKEIKDKNIKKEIENFKFFVQYGNFKDLSKYKDGDISYNPEVP
  N315            DNEKRYPVKMVDNKIILTKEIKDENIKIEIENFKFFVQYGNFKDLENYKDGDISYNPEVP
  NCTC8325        ENEKRYPVKMVDNKIIPTKEIKDKNIKKEIENFKFFVQYGNFKDLSKYKDGDISYNPEVP
  Newman          ENEKRYPVKMVDNKIIPTKEIKDKNIKKEIENFKFFVQYGNFKDLSKYKDGDISYNPEVP
  USA300_FPR3757  ENEKRYPVKMVDNKIIPTKEIKDKNIKKEIENFKFFVQYGNFKDLSKYKDGDISYNPEVP
                  :*************** ******:*** *****************.:*************
  
  COL             SYSAKYQLTNDDYNVKQLRKRYDIPTNKAPKLLLKGTGNLKGSSVGYKDIEFTFVEKKEE
  N315            SYSAKYQLTNDDYNVKQLRKRYDIPTNKAPKLLLKGTGNLKGSSVGYKDIEFTFVEKKEE
  NCTC8325        SYSAKYQLTNDDYNVKQLRKRYDIPTNKAPKLLLKGTGNLKGSSVGYKDIEFTFVEKKEE
  Newman          SYSAKYQLTNDDYNVKQLRKRYDIPTNKAPKLLLKGTGNLKGSSVGYKDIEFTFVEKKEE
  USA300_FPR3757  SYSAKYQLTNDDYNVKQLRKRYDIPTNKAPKLLLKGTGNLKGSSVGYKDIEFTFVEKKEE
                  ************************************************************
  
  COL             NIYFSDGLIFKPSEDK
  N315            NIYFSDGLIFKPSEDK
  NCTC8325        NIYFSDGLIFKPSEDK
  Newman          NIYFSDGLIFKPSEDK
  USA300_FPR3757  NIYFSDGLIFKPSEDK
                  ****************