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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA0194 [new locus tag: SA_RS01150 ]
- pan locus tag?: SAUPAN001049000
- symbol: SA0194
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA0194 [new locus tag: SA_RS01150 ]
- symbol: SA0194
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 229259..229480
- length: 222
- essential: no DEG
⊟Accession numbers[edit | edit source]
- Gene ID: 1122970 NCBI
- RefSeq: NP_373437 NCBI
- BioCyc: see SA_RS01150
- MicrobesOnline: 102463 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181ATGCTAAAATTACATAAAAAAATAGCTTGGACAGGAATCAAAGGTTCAGCTATAACTACA
TTTATTACTGCCTTATATAATGGAAGTAGTGTTTGGAACGCGCTAGCTGTTGCTGGTATT
GCTTTTGGTGGTGGCGCTGGTACTGCGGTTGCAGCTCTTGGTCGTGCAACAGTAATGAGA
TTTATCAAACGTTGGGGCGTACGAAAAACAGCTGCTTGGTAA60
120
180
222
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA0194 [new locus tag: SA_RS01150 ]
- symbol: SA0194
- description: hypothetical protein
- length: 73
- theoretical pI: 12.5474
- theoretical MW: 7664.05
- GRAVY: 0.50137
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Toxin production and resistance circular bacteriocin, circularin A/uberolysin family (TIGR03651; HMM-score: 17.3)
- TheSEED :
- hypothetical protein
- PFAM: no clan defined CclA_1; Putative cyclic bacteriocin (PF16942; HMM-score: 44.1)and 1 moreBacteriocin_IId; Bacteriocin class IId cyclical uberolysin-like (PF09221; HMM-score: 11.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.32
- Cytoplasmic Membrane Score: 9.55
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helices: 2
- LocateP: Secreted via minor pathways (bacteriocin) (no CS)
- Prediction by SwissProt Classification: Extracellular
- Pathway Prediction: Non-classical
- Intracellular possibility: 0.17
- Signal peptide possibility: -0.5
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.178644
- TAT(Tat/SPI): 0.041857
- LIPO(Sec/SPII): 0.020738
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MLKLHKKIAWTGIKGSAITTFITALYNGSSVWNALAVAGIAFGGGAGTAVAALGRATVMRFIKRWGVRKTAAW
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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