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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA0210 [new locus tag: SA_RS01235 ]
- pan locus tag?: SAUPAN001069000
- symbol: SA0210
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA0210 [new locus tag: SA_RS01235 ]
- symbol: SA0210
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 249013..250092
- length: 1080
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 1122987 NCBI
- RefSeq: NP_373454 NCBI
- BioCyc: see SA_RS01235
- MicrobesOnline: 102480 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1021ATGATGACGATTAAAGTTGGAATCATTGGGTGTGGTGGTATTGCGAATGGCAAGCACATG
CCAAGTTTACAAAAAGTTGAAAATGTTGAAATGATCGCATTTTGTGACGTAGACATTTCG
AAAGCAGCGAGTGCGGCAGAAGCATACGGAACTGACAATGCAAAGGTTTATGATGATTAC
AAAGCATTGTTAAAAGATGACACGATTGATGTTATCCATGTTTGTACGCCAAATGACTCG
CATTGTGAAATTACTGTAGCAGGGTTGCATGCCGGTAAGCATGTGATGTGTGAAAAACCA
ATGGCTAAAACGACAGCAGAAGCTCAAAAAATGATAGATACAGCTAAATCAACAGGTAAA
AAATTAACAATAGGTTATCAAAATCGCTTCAGACCAGATAGTCAATTTTTACATCAAGCA
GCGCAACGTGGCGACTTAGGAGACATTTACTTCGGAAAGGCACATGCCATTCGTCGTCGT
GCAGTACCGACATGGGGTGTCTTTCTAAACGAAGAAGCCCAAGGTGGAGGACCTTTAATC
GATATTGGTACGCACGCATTAGATTTAACGTTATGGATGATGGATAATTATGAACCAGAA
TCAGTGATGGGTTCAACATTCCATAAATTAAATAAGCAGCATGATGCGGCAAACGCTTGG
GGTTCATGGAATCCAGATGAATTTACAGTTGAAGACTCTGCGTTTGGCTTTATTAAAATG
AAGAACGGAGCGACGATCATTTTAGAATCCGCTTGGGCGATTAATTCTTTAGAAGTGGAT
GAGGCAAAATGTTCATTATCAGGAACGAAAGCAGGTGCTGATATGAAAGATGGTCTACGT
ATTCATGGTGAAGATATGGGCACACTTTATACCAAACACGTTGAATTGGAAAACAAAGGC
GTCGACTTTTATGAAGGTAATGAAGTGGATGAAGCTGAAGAAGAAGCAAAAGCTTGGATT
GATGCAGTTGTAAATGATACTGAACCAGTTGTGAAACCGGAACAAGCAATGGTAGTTACA
AAAATTCTTGAAGCGATTTATCAGTCTGCAAAATCAGGCAAAGCAATTTACTTTGAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA0210 [new locus tag: SA_RS01235 ]
- symbol: SA0210
- description: hypothetical protein
- length: 359
- theoretical pI: 4.83245
- theoretical MW: 39314.2
- GRAVY: -0.311699
⊟Function[edit | edit source]
- TIGRFAM: Energy metabolism Sugars inositol 2-dehydrogenase (TIGR04380; EC 1.1.1.18; HMM-score: 119.1)and 1 moreCellular processes Biosynthesis of natural products 2,3-diaminopropionate biosynthesis protein SbnB (TIGR03944; HMM-score: 17.7)
- TheSEED :
- Oxidoreductase, Gfo/Idh/MocA family
- PFAM: NADP_Rossmann (CL0063) GFO_IDH_MocA; Oxidoreductase family, NAD-binding Rossmann fold (PF01408; HMM-score: 102.8)and 4 moreox_reductase_C (CL0218) GFO_IDH_MocA_C; Oxidoreductase family, C-terminal alpha/beta domain (PF02894; HMM-score: 21.2)NADP_Rossmann (CL0063) NAD_binding_3; Homoserine dehydrogenase, NAD binding domain (PF03447; HMM-score: 19.1)Semialdhyde_dh; Semialdehyde dehydrogenase, NAD binding domain (PF01118; HMM-score: 16.2)GT-B (CL0113) Glyco_trans_4_2; Glycosyl transferase 4-like (PF13477; HMM-score: 14.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 0.83
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.025816
- TAT(Tat/SPI): 0.001537
- LIPO(Sec/SPII): 0.006777
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MMTIKVGIIGCGGIANGKHMPSLQKVENVEMIAFCDVDISKAASAAEAYGTDNAKVYDDYKALLKDDTIDVIHVCTPNDSHCEITVAGLHAGKHVMCEKPMAKTTAEAQKMIDTAKSTGKKLTIGYQNRFRPDSQFLHQAAQRGDLGDIYFGKAHAIRRRAVPTWGVFLNEEAQGGGPLIDIGTHALDLTLWMMDNYEPESVMGSTFHKLNKQHDAANAWGSWNPDEFTVEDSAFGFIKMKNGATIILESAWAINSLEVDEAKCSLSGTKAGADMKDGLRIHGEDMGTLYTKHVELENKGVDFYEGNEVDEAEEEAKAWIDAVVNDTEPVVKPEQAMVVTKILEAIYQSAKSGKAIYFE
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: SA0210 > SA0211 > SA0212
⊟Regulation[edit | edit source]
- regulators: CcpA regulon, MalR (repression) regulon
CcpA (TF) important in Carbon catabolism; RegPrecise MalR (TF) important in Maltose utilization, Maltodextrin utilization; RegPrecise
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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