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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA0540 [new locus tag: SA_RS03130 ]
- pan locus tag?: SAUPAN002361000
- symbol: SA0540
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA0540 [new locus tag: SA_RS03130 ]
- symbol: SA0540
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 633528..633896
- length: 369
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 1123346 NCBI
- RefSeq: NP_373794 NCBI
- BioCyc: see SA_RS03130
- MicrobesOnline: 102820 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361ATGAAATTATTTATTATTTTAGGTGCATTAAACGCGATGATGGCTGTCGGAACAGGTGCA
TTTGGTGCGCATGGTTTACAAGGAAAAATAAGTGATCACTATTTATCAGTATGGGAAAAA
GCAACGACGTATCAAATGTACCATGGCTTAGCATTATTAATTATAGGTGTAATTAGTGGT
ACAACTTCAATCAATGTTAACTGGGCTGGCTGGTTAATATTTGCTGGTATTATTTTCTTT
AGTGGATCATTATATATTTTAGTATTAACTCAAATTAAAGTTTTAGGTGCGATTACGCCA
ATTGGTGGCGTATTGTTCATCATTGGCTGGATAATGTTAATCATTGCGACATTCAAATTT
GCTGGTTAA60
120
180
240
300
360
369
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA0540 [new locus tag: SA_RS03130 ]
- symbol: SA0540
- description: hypothetical protein
- length: 122
- theoretical pI: 9.8831
- theoretical MW: 13064.7
- GRAVY: 1.15328
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 4
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0
- Signal peptide possibility: 1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: Signal peptide SP(Sec/SPI) length 25 aa
- SP(Sec/SPI): 0.660095
- TAT(Tat/SPI): 0.008896
- LIPO(Sec/SPII): 0.069608
- Cleavage Site: CS pos: 25-26. AHG-LQ. Pr: 0.3590
- predicted transmembrane helices (TMHMM): 4
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKLFIILGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINVNWAGWLIFAGIIFFSGSLYILVLTQIKVLGAITPIGGVLFIIGWIMLIIATFKFAG
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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