From AureoWiki
Jump to navigation Jump to search

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0543 [new locus tag: SA_RS03145 ]
  • pan locus tag?: SAUPAN002364000
  • symbol: SA0543
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0543 [new locus tag: SA_RS03145 ]
  • symbol: SA0543
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 636107..636757
  • length: 651
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGACACGTATTGCAAAAAAACTTGGTTACAGTGAAAGTAACAGCTTTGTTACAAACACT
    GTCATCCAGTTTACGTTACATTCGGAATCGTTTCCTAGAATATTTAGAATTACCTCTCGA
    GATACAAACTTAATAAAAATTTCGCAAGCTAATAAAATTTCGCGTCAAATTACAAATAAT
    GAAATTTCTTTAGCCGAAGCAAAAACACAACTTGAAAAAATATATGTTGCTAAGCGTGAC
    AGCAGTCTTCCCTTTAAAGGTTTTGCTGCAGCAATGATTGCAATGAGTTTCTTATATTTA
    CAAGGTGGTAGATTGATTGATGTTTTAACTGCGATATTAGCAGGTAGTCTAGGATACCTA
    GTCACTGAGATTTTAGATCGCAAGTTACATGCACAGTTTATCCCAGAATTCATTGGTTCA
    TTAGTTATTGGGATTATCGCCGTTATTGGACATACACTTATCCCAACAGGTGACTTGGCA
    ACTATTATCATTGCGGCAGTCATGCCTATTGTTCCTGGTGTATTAATAACAAACGCAATA
    CAAGATTTATTTGGTGGACACATGTTGATGTTCACAACGAAATCATTAGAAGCATTGGTT
    ACTGCGTTTGGCATCGGTGCTGGCGTTGGTAGCGTATTAATTTTAGTATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    651

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0543 [new locus tag: SA_RS03145 ]
  • symbol: SA0543
  • description: hypothetical protein
  • length: 216
  • theoretical pI: 9.97544
  • theoretical MW: 23307.4
  • GRAVY: 0.616667

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01107863: hypothetical protein
  • PFAM:
    UMP_1 (CL0470) ThrE; Putative threonine/serine exporter (PF06738; HMM-score: 173)
    and 2 more
    ThrE_2; Threonine/Serine exporter, ThrE (PF12821; HMM-score: 42.6)
    no clan defined RseC_MucC; Positive regulator of sigma(E), RseC/MucC (PF04246; HMM-score: 9.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005842
    • TAT(Tat/SPI): 0.00057
    • LIPO(Sec/SPII): 0.00059
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTRIAKKLGYSESNSFVTNTVIQFTLHSESFPRIFRITSRDTNLIKISQANKISRQITNNEISLAEAKTQLEKIYVAKRDSSLPFKGFAAAMIAMSFLYLQGGRLIDVLTAILAGSLGYLVTEILDRKLHAQFIPEFIGSLVIGIIAVIGHTLIPTGDLATIIIAAVMPIVPGVLITNAIQDLFGGHMLMFTTKSLEALVTAFGIGAGVGSVLILV

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA0543&oldid=87751"